Macromolecule Annotations for the Entities in PDB 1NBM

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A380-510 d1nbma1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
B380-510 d1nbmb1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
C380-510 d1nbmc1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
D358-475 d1nbmd1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
E358-474 d1nbme1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
F358-474 d1nbmf1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
A24-94 d1nbma2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
B24-94 d1nbmb2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
C19-94 d1nbmc2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
D9-81 d1nbmd2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
E9-81 d1nbme2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
F9-81 d1nbmf2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
A95-379 d1nbma3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of alpha subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
B95-379 d1nbmb3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of alpha subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
C95-379 d1nbmc3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of alpha subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
D82-357 d1nbmd3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of beta subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
E82-357 d1nbme3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of beta subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
F82-357 d1nbmf3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of beta subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
G d1nbmg_ Alpha and beta proteins (a/b) Pyruvate kinase C-terminal domain-like ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit Cow (Bos taurus) [TaxId: 9913]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 1nbmA01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3
A2 1nbmA02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
A3 1nbmA03 Mainly Alpha Up-down Bundle Lysin
B1 1nbmB01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3
B2 1nbmB02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
B3 1nbmB03 Mainly Alpha Up-down Bundle Lysin
C1 1nbmC01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3
C2 1nbmC02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
C3 1nbmC03 Mainly Alpha Up-down Bundle Lysin
D1 1nbmD01 Mainly Beta Beta Barrel Thrombin, subunit H
D2 1nbmD02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
D3 1nbmD03 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
E1 1nbmE01 Mainly Beta Beta Barrel Thrombin, subunit H
E2 1nbmE02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
E3 1nbmE03 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
F1 1nbmF01 Mainly Beta Beta Barrel Thrombin, subunit H
F2 1nbmF02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
F3 1nbmF03 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
G 1nbmG00 Mainly Alpha Orthogonal Bundle Helix Hairpins

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
D PF00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain Family
A PF02874 ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain Domain This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. PFAM PF02874
E PF00306 ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain Domain PFAM PF00306
A PF00306 ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain Domain PFAM PF00306
E PF00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain Family
D PF02874 ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain Domain This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. PFAM PF02874
A PF00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain Family
G PF00231 ATP-synt ATP synthase Domain PFAM PF00231
E PF02874 ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain Domain This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. PFAM PF02874
D PF00306 ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain Domain PFAM PF00306

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B,C F1-ATPASE (1NBM:A,B,C)
D,F F1-ATPASE (1NBM:D,F)
E F1-ATPASE (1NBM:E)
G F1-ATPASE (1NBM:G)

Protein Modification Annotation

Type PDB Residue Nr. Description