Macromolecule Annotations for the Entities in PDB 1N8Z

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A1-107 d1n8za1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Engineered (including hybrid species)
A108-214 d1n8za2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Human (Homo sapiens) [TaxId: 9606]
B1-120 d1n8zb1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Engineered (including hybrid species)
B121-220 d1n8zb2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Human (Homo sapiens) [TaxId: 9606]
C1-165 d1n8zc1 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta- alpha superhelix) L domain-like L domain Protooncoprotein Her2 extracellular domain Human (Homo sapiens) [TaxId: 9606]
C323-488 d1n8zc2 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta- alpha superhelix) L domain-like L domain Protooncoprotein Her2 extracellular domain Human (Homo sapiens) [TaxId: 9606]
C166-322 d1n8zc3 Small proteins Knottins (small inhibitors, toxins, lectins) Growth factor receptor domain Growth factor receptor domain Protooncoprotein Her2 extracellular domain Human (Homo sapiens) [TaxId: 9606]
C489-607 d1n8zc4 Small proteins Knottins (small inhibitors, toxins, lectins) Growth factor receptor domain Growth factor receptor domain Protooncoprotein Her2 extracellular domain Human (Homo sapiens) [TaxId: 9606]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A Herceptin Fab (antibody) - light chain (1N8Z:A)
  • none
  • none
  • none
B Herceptin Fab (antibody) - heavy chain (1N8Z:B)
  • none
  • none
  • none
C Receptor protein-tyrosine kinase erbB-2 (1N8Z:C)

Protein Modification Annotation

Type PDB Residue Nr. Description