Macromolecule Annotations for the Entities in PDB 1N8R

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1n8r1_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae Archaeon Haloarcula marismortui [TaxId: 2238]
2 d1n8r2_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37e Ribosomal protein L37e Archaeon Haloarcula marismortui [TaxId: 2238]
3 d1n8r3_ All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e Archaeon Haloarcula marismortui [TaxId: 2238]
4 d1n8r4_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L44e Ribosomal protein L44e Archaeon Haloarcula marismortui [TaxId: 2238]
C91-237 d1n8rc1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
C1-90 d1n8rc2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
D d1n8rd_ All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 Archaeon Haloarcula marismortui [TaxId: 2238]
E d1n8re_ Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Archaeon Haloarcula marismortui [TaxId: 2238]
F d1n8rf_ Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 Archaeon Haloarcula marismortui [TaxId: 2238]
G1-79 d1n8rg1 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
G80-172 d1n8rg2 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
H d1n8rh_ Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae Archaeon Haloarcula marismortui [TaxId: 2238]
I d1n8ri_ Peptides Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Archaeon Haloarcula marismortui [TaxId: 2238]
J d1n8rj_ Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e Archaeon Haloarcula marismortui [TaxId: 2238]
K d1n8rk_ Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Archaeon Haloarcula marismortui [TaxId: 2238]
L d1n8rl_ All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Archaeon Haloarcula marismortui [TaxId: 2238]
M d1n8rm_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) Archaeon Haloarcula marismortui [TaxId: 2238]
N d1n8rn_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L15e Ribosomal protein L15e Archaeon Haloarcula marismortui [TaxId: 2238]
O d1n8ro_ Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) Archaeon Haloarcula marismortui [TaxId: 2238]
P d1n8rp_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L18e Archaeon Haloarcula marismortui [TaxId: 2238]
Q d1n8rq_ All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Archaeon Haloarcula marismortui [TaxId: 2238]
R d1n8rr_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L21e Archaeon Haloarcula marismortui [TaxId: 2238]
S d1n8rs_ Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Archaeon Haloarcula marismortui [TaxId: 2238]
T d1n8rt_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 Archaeon Haloarcula marismortui [TaxId: 2238]
U d1n8ru_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) Archaeon Haloarcula marismortui [TaxId: 2238]
V d1n8rv_ Small proteins Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) Ribosomal protein L24e Ribosomal protein L24e Archaeon Haloarcula marismortui [TaxId: 2238]
W d1n8rw_ All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Archaeon Haloarcula marismortui [TaxId: 2238]
X d1n8rx_ Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Archaeal L30 (L30a) Archaeon Haloarcula marismortui [TaxId: 2238]
Y d1n8ry_ Alpha and beta proteins (a+b) Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Archaeon Haloarcula marismortui [TaxId: 2238]
Z d1n8rz_ Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e Archaeon Haloarcula marismortui [TaxId: 2238]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
1 1n8r100 Mainly Beta Single Sheet N-terminal domain of TfIIb
2 1n8r200 Mainly Beta Single Sheet N-terminal domain of TfIIb
3 1n8r300 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain; Chain: I; Ribosomal protein L39e
4 1n8r400 Alpha Beta Roll Nuclear Transport Factor 2; Chain: A,
C1 1n8rC01 Mainly Beta Roll SH3 type barrels.
C2 1n8rC02 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
C3 1n8rC03 Few Secondary Structures Irregular Ribosomal protein L2; domain 3 Ribosomal protein L2, domain 3
D1 1n8rD01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3 Translation factors
D2 1n8rD02 Alpha Beta 2-Layer Sandwich Ribosomal Protein L3; Chain: B; domain 2,
D3 1n8rD03 Few Secondary Structures Irregular Ribosomal protein L3; domain 3 Ribosomal protein L3, domain 3
E 1n8rE00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L4; Chain: A;
F 1n8rF00 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A,
G1 1n8rG01 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
G2 1n8rG02 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
H 1n8rH00 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A;
I 1n8rI00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A
J 1n8rJ00 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
K 1n8rK00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A;
L 1n8rL00 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal Protein L14;
M1 1n8rM01 Few Secondary Structures Irregular Molecule: Ribosomal Protein L15; Chain: K; domain 1
M2 1n8rM02 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
N 1n8rN00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein l15e
O 1n8rO00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
P 1n8rP00 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
Q1 1n8rQ01 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1
Q2 1n8rQ02 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
Q3 1n8rQ03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces Single Heli x bin
R 1n8rR00 Mainly Beta Roll SH3 type barrels. Myosin S1 fragment SH3-like barrel
S 1n8rS00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal Protein L22; Chain A
T 1n8rT00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
U 1n8rU00 Mainly Beta Roll SH3 type barrels.
V 1n8rV00 Mainly Beta Roll Ribosomal Protein L24e; Chain: T;
W 1n8rW00 Mainly Alpha Orthogonal Bundle Helix Hairpins
X1 1n8rX01 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A,
X2 1n8rX02 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3
Y 1n8rY00 Alpha Beta Roll Ribosomal Protein L31e; Chain: W;

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 23S ribosomal RNA (1N8R:A)
  • none
  • none
  • none
B 5S ribosomal RNA (1N8R:B)
  • none
  • none
  • none
C 50S ribosomal protein L2P (1N8R:C)
D 50S ribosomal protein L3P (1N8R:D)
E 50S ribosomal protein L4E (1N8R:E)
F 50S ribosomal protein L5P (1N8R:F)
G 50S ribosomal protein L6P (1N8R:G)
H 50S ribosomal protein L7Ae (1N8R:H)
I Acidic ribosomal protein P0 homolog (1N8R:I)
J 50S ribosomal protein L10e (1N8R:J)
K 50S ribosomal protein L13P (1N8R:K)
L 50S ribosomal protein L14P (1N8R:L)
M 50S ribosomal protein L15P (1N8R:M)
  • none
N 50S ribosomal protein L15E (1N8R:N)
O 50S ribosomal protein L18P (1N8R:O)
P 50S ribosomal protein L18E (1N8R:P)
Q 50S ribosomal protein L19E (1N8R:Q)
R 50S ribosomal protein L21e (1N8R:R)
S 50S ribosomal protein L22P (1N8R:S)
T 50S ribosomal protein L23P (1N8R:T)
U 50S ribosomal protein L24P (1N8R:U)
V 50S ribosomal protein L24E (1N8R:V)
  • none
W 50S ribosomal protein L29P (1N8R:W)
X 50S ribosomal protein L30P (1N8R:X)
Y 50S ribosomal protein L31E (1N8R:Y)
Z 50S ribosomal protein L32E (1N8R:Z)
1 50S ribosomal protein L37AE (1N8R:1)
2 50S ribosomal protein L37e (1N8R:2)
3 50S ribosomal protein L39e (1N8R:3)
4 50S ribosomal protein L44E (1N8R:4)

Protein Modification Annotation

Type PDB Residue Nr. Description