Macromolecule Annotations for the Entities in PDB 1N5Y

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A430-558 d1n5ya1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like Ribonuclease H HIV RNase H (Domain of reverse transcriptase) Human immunodeficiency virus type 1 [TaxId: 11676]
A1-429 d1n5ya2 Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase HIV-1 reverse transcriptase Human immunodeficiency virus type 1 [TaxId: 11676]
B d1n5yb_ Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase HIV-1 reverse transcriptase Human immunodeficiency virus type 1 [TaxId: 11676]
H1-123 d1n5yh1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Mouse (Mus musculus), cluster 6 [TaxId: 10090]
H124-225 d1n5yh2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Mouse (Mus musculus) [TaxId: 10090]
L1-107 d1n5yl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Mouse (Mus musculus), cluster 4 [TaxId: 10090]
L108-211 d1n5yl2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Mouse (Mus musculus) [TaxId: 10090]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
L PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
B PF06817 RVT_thumb Reverse transcriptase thumb domain Domain This domain is known as the thumb domain. It is composed of a four helix bundle [1]. PFAM PF06817
B PF06815 RVT_connect Reverse transcriptase connection domain Domain This domain is known as the connection domain. This domain lies between the thumb and palm domains [1]. PFAM PF06815
A PF06817 RVT_thumb Reverse transcriptase thumb domain Domain This domain is known as the thumb domain. It is composed of a four helix bundle [1]. PFAM PF06817
H PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
B PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) Family
A PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) Family
A PF06815 RVT_connect Reverse transcriptase connection domain Domain This domain is known as the connection domain. This domain lies between the thumb and palm domains [1]. PFAM PF06815
A PF00075 RNase_H RNase H Domain RNase H digests the RNA strand of an RNA/DNA hybrid. Important enzyme in retroviral replication cycle, and often found as a domain associated with reverse transcriptases. Structure is a mixed alpha+beta fold with three a/b/a layers. PFAM PF00075
H PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
L PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
T 5'-D(*AP*TP*GP*C*TP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)- 3' (1N5Y:T)
  • none
  • none
  • none
P 5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(ATM))- 3' (1N5Y:P)
  • none
  • none
  • none
A REVERSE TRANSCRIPTASE (1N5Y:A)
  • none
B REVERSE TRANSCRIPTASE (1N5Y:B)
  • none
L monoclonal antibody (light chain) (1N5Y:L)
H monoclonal antibody (heavy chain) (1N5Y:H)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description