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139555
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
1N4R
Protein Geranylgeranyltransferase type-I Complexed with a Geranylgeranylated KKKSKTKCVIL Peptide Product
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly 1 (gz) (A+S)
Biological Assembly 2 (gz) (A+S)
Biological Assembly 3 (gz) (A+S)
Biological Assembly 4 (gz) (A+S)
Biological Assembly 5 (gz) (A+S)
Biological Assembly 6 (gz) (A+S)
Biological Assembly 7 (gz) (S)
Biological Assembly 8 (gz) (S)
Biological Assembly 9 (gz) (S)
Biological Assembly 10 (gz) (S)
Biological Assembly 11 (gz) (S)
Biological Assembly 12 (gz) (S)
Macromolecule Annotations for the Entities in PDB 1N4R
Domain Annotation: SCOP Classification
SCOP Database (version: 1.75) Homepage
Chains
Domain Info
Class
Fold
Superfamily
Family
Domain
Species
A
d1n4ra_
All alpha proteins
alpha-alpha superhelix
Protein prenylyltransferase
Protein prenylyltransferase
Protein farnesyltransferase alpha-subunit
Rat (Rattus norvegicus) [TaxId: 10116]
B
d1n4rb_
All alpha proteins
alpha/alpha toroid
Terpenoid cyclases/Protein prenyltransferases
Protein prenyltransferases
Protein farnesyltransferase, beta-subunit
Rat (Rattus norvegicus) [TaxId: 10116]
C
d1n4rc_
All alpha proteins
alpha-alpha superhelix
Protein prenylyltransferase
Protein prenylyltransferase
Protein farnesyltransferase alpha-subunit
Rat (Rattus norvegicus) [TaxId: 10116]
D
d1n4rd_
All alpha proteins
alpha/alpha toroid
Terpenoid cyclases/Protein prenyltransferases
Protein prenyltransferases
Protein farnesyltransferase, beta-subunit
Rat (Rattus norvegicus) [TaxId: 10116]
E
d1n4re_
All alpha proteins
alpha-alpha superhelix
Protein prenylyltransferase
Protein prenylyltransferase
Protein farnesyltransferase alpha-subunit
Rat (Rattus norvegicus) [TaxId: 10116]
F
d1n4rf_
All alpha proteins
alpha/alpha toroid
Terpenoid cyclases/Protein prenyltransferases
Protein prenyltransferases
Protein farnesyltransferase, beta-subunit
Rat (Rattus norvegicus) [TaxId: 10116]
G
d1n4rg_
All alpha proteins
alpha-alpha superhelix
Protein prenylyltransferase
Protein prenylyltransferase
Protein farnesyltransferase alpha-subunit
Rat (Rattus norvegicus) [TaxId: 10116]
H
d1n4rh_
All alpha proteins
alpha/alpha toroid
Terpenoid cyclases/Protein prenyltransferases
Protein prenyltransferases
Protein farnesyltransferase, beta-subunit
Rat (Rattus norvegicus) [TaxId: 10116]
I
d1n4ri_
All alpha proteins
alpha-alpha superhelix
Protein prenylyltransferase
Protein prenylyltransferase
Protein farnesyltransferase alpha-subunit
Rat (Rattus norvegicus) [TaxId: 10116]
J
d1n4rj_
All alpha proteins
alpha/alpha toroid
Terpenoid cyclases/Protein prenyltransferases
Protein prenyltransferases
Protein farnesyltransferase, beta-subunit
Rat (Rattus norvegicus) [TaxId: 10116]
K
d1n4rk_
All alpha proteins
alpha-alpha superhelix
Protein prenylyltransferase
Protein prenylyltransferase
Protein farnesyltransferase alpha-subunit
Rat (Rattus norvegicus) [TaxId: 10116]
L
d1n4rl_
All alpha proteins
alpha/alpha toroid
Terpenoid cyclases/Protein prenyltransferases
Protein prenyltransferases
Protein farnesyltransferase, beta-subunit
Rat (Rattus norvegicus) [TaxId: 10116]
Domain Annotation: CATH
CATH Database (version 4.0.0) Homepage
Chains
Domain
Class
Architecture
Topology
Homology
A
1n4rA00
Mainly Alpha
Alpha Horseshoe
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Protein prenylyltransferase
B
1n4rB00
Mainly Alpha
Alpha/alpha barrel
Glycosyltransferase
C
1n4rC00
Mainly Alpha
Alpha Horseshoe
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Protein prenylyltransferase
D
1n4rD00
Mainly Alpha
Alpha/alpha barrel
Glycosyltransferase
E
1n4rE00
Mainly Alpha
Alpha Horseshoe
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Protein prenylyltransferase
F
1n4rF00
Mainly Alpha
Alpha/alpha barrel
Glycosyltransferase
G
1n4rG00
Mainly Alpha
Alpha Horseshoe
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Protein prenylyltransferase
H
1n4rH00
Mainly Alpha
Alpha/alpha barrel
Glycosyltransferase
I
1n4rI00
Mainly Alpha
Alpha Horseshoe
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Protein prenylyltransferase
J
1n4rJ00
Mainly Alpha
Alpha/alpha barrel
Glycosyltransferase
K
1n4rK00
Mainly Alpha
Alpha Horseshoe
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
Protein prenylyltransferase
L
1n4rL00
Mainly Alpha
Alpha/alpha barrel
Glycosyltransferase
Protein Family Annotation
Pfam Database Homepage
Chains
Pfam Accession
Pfam Identifier
Pfam Description
Type
Source
Gene Product Annotation
Gene Ontology Consortium Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A,C,E,G,I,K
Protein farnesyltransferase/geranylgeranyltransferase type- 1 subunit alpha (1N4R:A,C,E,G,I,K)
Prenyltransferase Activity
Protein Farnesyltransferase Activity
Protein Geranylgeranyltransferase Activity
Caax Protein Geranylgeranyltransferase Activity
Protein Binding
Drug Binding
Zinc Ion Binding
Protein Prenyltransferase Activity
Transferase Activity
Isoprenoid Binding
Peptide Binding
Positive Regulation of Cell Proliferation
Response to Inorganic Substance
Response to Organic Cyclic Compound
Protein Prenylation
Protein Farnesylation
Protein Geranylgeranylation
Response to Cytokine
Negative Regulation of Apoptotic Process
Positive Regulation of Cell Cycle
Positive Regulation of Nitric Oxide Synthase Biosynthetic Process
Negative Regulation of Nitric Oxide Synthase Biosynthetic Process
Cytoplasm
Caax Protein Geranylgeranyltransferase Complex
Protein Farnesyltransferase Complex
B,D,F,H,J,L
Geranylgeranyl transferase type-1 subunit beta (1N4R:B,D,F,H,J,L)
Catalytic Activity
Prenyltransferase Activity
Protein Geranylgeranyltransferase Activity
Caax Protein Geranylgeranyltransferase Activity
Protein Binding
Drug Binding
Zinc Ion Binding
Transferase Activity
Isoprenoid Binding
Peptide Binding
Metal Ion Binding
Positive Regulation of Cell Proliferation
Protein Geranylgeranylation
Response to Cytokine
Positive Regulation of Cell Cycle
Negative Regulation of Nitric Oxide Synthase Biosynthetic Process
Caax Protein Geranylgeranyltransferase Complex
M,N,O,P,Q,R
Fusion protein consisting of transforming protein p21b and Ras related protein Rap- 2b (1N4R:M,N,O,P,Q,R)
none
none
none
Protein Modification Annotation
Type
PDB Residue Nr.
Description