Macromolecule Annotations for the Entities in PDB 1ML5

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
C d1ml5c_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
E d1ml5e_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
F d1ml5f_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
G d1ml5g_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
H d1ml5h_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
I d1ml5i_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
J d1ml5j_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
K d1ml5k_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
L d1ml5l_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
M d1ml5m_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
N d1ml5n_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
O d1ml5o_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
P d1ml5p_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
Q d1ml5q_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
R d1ml5r_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
S d1ml5s_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
T d1ml5t_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
U d1ml5u_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
V d1ml5v_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
W d1ml5w_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
X d1ml5x_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]
Z d1ml5z_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Escherichia coli [TaxId: 562]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
W PF01649 Ribosomal_S20p Ribosomal protein S20 Family
L PF00380 Ribosomal_S9 Ribosomal protein S9/S16 Family
N PF00411 Ribosomal_S11 Ribosomal protein S11 Family
J PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e Domain This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. PFAM PF00177
R PF00312 Ribosomal_S15 Ribosomal protein S15 Domain PFAM PF00312
S PF00886 Ribosomal_S16 Ribosomal protein S16 Family
M PF00338 Ribosomal_S10 Ribosomal protein S10p/S20e Family
K PF00410 Ribosomal_S8 Ribosomal protein S8 Domain PFAM PF00410
r PF01246 Ribosomal_L24e Ribosomal protein L24e Family
Q PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e Family
P PF00416 Ribosomal_S13 Ribosomal protein S13/S18 Family
F PF00189 Ribosomal_S3_C Ribosomal protein S3, C-terminal domain Domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. PFAM PF00189
t PF00276 Ribosomal_L23 Ribosomal protein L23 Family
I PF01250 Ribosomal_S6 Ribosomal protein S6 Domain PFAM PF01250
o PF00828 Ribosomal_L18e Ribosomal protein L18e/L15 Family
l PF00298 Ribosomal_L11 Ribosomal protein L11, RNA binding domain Domain PFAM PF00298
h PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
g PF00281 Ribosomal_L5 Ribosomal protein L5 Domain PFAM PF00281
g PF00673 Ribosomal_L5_C ribosomal L5P family C-terminus Domain This region is found associated with Pfam:PF00281. PFAM PF00673
q PF00861 Ribosomal_L18p Ribosomal L18p/L5e family Family
c PF00687 Ribosomal_L1 Ribosomal protein L1p/L10e family Domain This family includes prokaryotic L1 and eukaryotic L10. PFAM PF00687
e PF00297 Ribosomal_L3 Ribosomal protein L3 Family
p PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e Family
Z PF03462 PCRF PCRF domain Domain This domain is found in peptide chain release factors. PFAM PF03462
E PF00318 Ribosomal_S2 Ribosomal protein S2 Family
H PF03719 Ribosomal_S5_C Ribosomal protein S5, C-terminal domain Domain PFAM PF03719
s PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e Domain This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. PFAM PF00237
G PF01479 S4 S4 domain Domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. PFAM PF01479
x PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e Domain This family includes prokaryotic L30 and eukaryotic L7. PFAM PF00327
v PF01386 Ribosomal_L25p Ribosomal L25p family Domain Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. PFAM PF01386
Z PF00472 RF-1 RF-1 domain Family
H PF00333 Ribosomal_S5 Ribosomal protein S5, N-terminal domain Domain PFAM PF00333
F PF07650 KH_2 KH domain Domain PFAM PF07650
T PF00366 Ribosomal_S17 Ribosomal protein S17 Domain PFAM PF00366
f PF00573 Ribosomal_L4 Ribosomal protein L4/L1 family Family
h PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
G PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain Family
u PF00467 KOW KOW motif Family
O PF00164 Ribosom_S12_S23 Ribosomal protein S12/S23 Family
w PF00831 Ribosomal_L29 Ribosomal L29 protein Family
l PF03946 Ribosomal_L11_N Ribosomal protein L11, N-terminal domain Domain The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. PFAM PF03946
d PF03947 Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain Domain PFAM PF03947
m PF00572 Ribosomal_L13 Ribosomal protein L13 Family
n PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e Domain PFAM PF00238
d PF00181 Ribosomal_L2 Ribosomal Proteins L2, RNA binding domain Domain PFAM PF00181
V PF00203 Ribosomal_S19 Ribosomal protein S19 Domain PFAM PF00203
U PF01084 Ribosomal_S18 Ribosomal protein S18 Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 30S 16S RIBOSOMAL RNA (1ML5:A)
  • none
  • none
  • none
B T-RNA(PHE) (1ML5:B)
  • none
  • none
  • none
C A- AND P-SITE MESSENGER RNA CODONS (1ML5:C)
a 50S 23S RIBOSOMAL RNA (1ML5:a)
  • none
  • none
  • none
b 50S 5S RIBOSOMAL RNA (1ML5:b)
  • none
  • none
  • none
Z Peptide chain release factor 2 (1ML5:Z)
E 30S RIBOSOMAL PROTEIN S2 (1ML5:E)
F 30S RIBOSOMAL PROTEIN S3 (1ML5:F)
G 30S RIBOSOMAL PROTEIN S4 (1ML5:G)
H 30S RIBOSOMAL PROTEIN S5 (1ML5:H)
I 30S RIBOSOMAL PROTEIN S6 (1ML5:I)
J 30S RIBOSOMAL PROTEIN S7 (1ML5:J)
K 30S RIBOSOMAL PROTEIN S8 (1ML5:K)
  • none
  • none
  • none
L 30S RIBOSOMAL PROTEIN S9 (1ML5:L)
M 30S RIBOSOMAL PROTEIN S10 (1ML5:M)
N 30S RIBOSOMAL PROTEIN S11 (1ML5:N)
O 30S RIBOSOMAL PROTEIN S12 (1ML5:O)
P 30S RIBOSOMAL PROTEIN S13 (1ML5:P)
Q 30S RIBOSOMAL PROTEIN S14 (1ML5:Q)
R 30S RIBOSOMAL PROTEIN S15 (1ML5:R)
S 30S RIBOSOMAL PROTEIN S16 (1ML5:S)
T 30S RIBOSOMAL PROTEIN S17 (1ML5:T)
U 30S RIBOSOMAL PROTEIN S18 (1ML5:U)
V 30S RIBOSOMAL PROTEIN S19 (1ML5:V)
W 30S RIBOSOMAL PROTEIN S20 (1ML5:W)
X 30S RIBOSOMAL PROTEIN THX (1ML5:X)
c 50S RIBOSOMAL PROTEIN L1 (1ML5:c)
  • none
  • none
  • none
d 50S RIBOSOMAL PROTEIN L2 (1ML5:d)
  • none
  • none
  • none
e 50S RIBOSOMAL PROTEIN L3 (1ML5:e)
  • none
  • none
  • none
f 50S RIBOSOMAL PROTEIN L4 (1ML5:f)
  • none
  • none
  • none
g 50S RIBOSOMAL PROTEIN L5 (1ML5:g)
  • none
  • none
  • none
h 50S RIBOSOMAL PROTEIN L6 (1ML5:h)
  • none
  • none
  • none
l 50S RIBOSOMAL PROTEIN L11 (1ML5:l)
  • none
  • none
  • none
m 50S RIBOSOMAL PROTEIN L13 (1ML5:m)
  • none
  • none
  • none
n 50S RIBOSOMAL PROTEIN L14 (1ML5:n)
  • none
  • none
  • none
o 50S RIBOSOMAL PROTEIN L15 (1ML5:o)
  • none
  • none
  • none
p 50S RIBOSOMAL PROTEIN L16 (1ML5:p)
  • none
  • none
  • none
q 50S RIBOSOMAL PROTEIN L18 (1ML5:q)
  • none
  • none
  • none
r 50S RIBOSOMAL PROTEIN L19 (1ML5:r)
  • none
  • none
  • none
s 50S RIBOSOMAL PROTEIN L22 (1ML5:s)
  • none
  • none
  • none
t 50S RIBOSOMAL PROTEIN L23 (1ML5:t)
  • none
  • none
  • none
u 50S RIBOSOMAL PROTEIN L24 (1ML5:u)
  • none
  • none
  • none
v 50S RIBOSOMAL PROTEIN L25 (1ML5:v)
  • none
  • none
  • none
w 50S RIBOSOMAL PROTEIN L29 (1ML5:w)
  • none
  • none
  • none
x 50S RIBOSOMAL PROTEIN L30 (1ML5:x)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description