Macromolecule Annotations for the Entities in PDB 1M9X

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1m9xa_ All beta proteins Cyclophilin-like Cyclophilin-like Cyclophilin (peptidylprolyl isomerase) Cyclophilin (eukaryotic) Human (Homo sapiens), variant A [TaxId: 9606]
B d1m9xb_ All beta proteins Cyclophilin-like Cyclophilin-like Cyclophilin (peptidylprolyl isomerase) Cyclophilin (eukaryotic) Human (Homo sapiens), variant A [TaxId: 9606]
C d1m9xc_ All alpha proteins Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain HIV-1 capsid protein Human immunodeficiency virus type 1 [TaxId: 11676]
D d1m9xd_ All alpha proteins Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain HIV-1 capsid protein Human immunodeficiency virus type 1 [TaxId: 11676]
E d1m9xe_ All beta proteins Cyclophilin-like Cyclophilin-like Cyclophilin (peptidylprolyl isomerase) Cyclophilin (eukaryotic) Human (Homo sapiens), variant A [TaxId: 9606]
F d1m9xf_ All beta proteins Cyclophilin-like Cyclophilin-like Cyclophilin (peptidylprolyl isomerase) Cyclophilin (eukaryotic) Human (Homo sapiens), variant A [TaxId: 9606]
G d1m9xg_ All alpha proteins Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain HIV-1 capsid protein Human immunodeficiency virus type 1 [TaxId: 11676]
H d1m9xh_ All alpha proteins Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain HIV-1 capsid protein Human immunodeficiency virus type 1 [TaxId: 11676]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF00160 Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Domain The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1]. PFAM PF00160
C PF00607 Gag_p24 gag gene protein p24 (core nucleocapsid protein) Family

Protein Modification Annotation

Type PDB Residue Nr. Description