Macromolecule Annotations for the Entities in PDB 1M90

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1m901_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae Archaeon Haloarcula marismortui [TaxId: 2238]
2 d1m902_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37e Ribosomal protein L37e Archaeon Haloarcula marismortui [TaxId: 2238]
3 d1m903_ All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e Archaeon Haloarcula marismortui [TaxId: 2238]
4 d1m904_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L44e Ribosomal protein L44e Archaeon Haloarcula marismortui [TaxId: 2238]
C91-237 d1m90c1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
C1-90 d1m90c2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
D d1m90d_ All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 Archaeon Haloarcula marismortui [TaxId: 2238]
E d1m90e_ Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Archaeon Haloarcula marismortui [TaxId: 2238]
F d1m90f_ Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 Archaeon Haloarcula marismortui [TaxId: 2238]
G1-79 d1m90g1 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
G80-172 d1m90g2 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
H d1m90h_ Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae Archaeon Haloarcula marismortui [TaxId: 2238]
I d1m90i_ Peptides Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Archaeon Haloarcula marismortui [TaxId: 2238]
J d1m90j_ Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e Archaeon Haloarcula marismortui [TaxId: 2238]
K d1m90k_ Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Archaeon Haloarcula marismortui [TaxId: 2238]
L d1m90l_ All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Archaeon Haloarcula marismortui [TaxId: 2238]
M d1m90m_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) Archaeon Haloarcula marismortui [TaxId: 2238]
N d1m90n_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L15e Ribosomal protein L15e Archaeon Haloarcula marismortui [TaxId: 2238]
O d1m90o_ Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) Archaeon Haloarcula marismortui [TaxId: 2238]
P d1m90p_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L18e Archaeon Haloarcula marismortui [TaxId: 2238]
Q d1m90q_ All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Archaeon Haloarcula marismortui [TaxId: 2238]
R d1m90r_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L21e Archaeon Haloarcula marismortui [TaxId: 2238]
S d1m90s_ Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Archaeon Haloarcula marismortui [TaxId: 2238]
T d1m90t_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 Archaeon Haloarcula marismortui [TaxId: 2238]
U d1m90u_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) Archaeon Haloarcula marismortui [TaxId: 2238]
V d1m90v_ Small proteins Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) Ribosomal protein L24e Ribosomal protein L24e Archaeon Haloarcula marismortui [TaxId: 2238]
W d1m90w_ All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Archaeon Haloarcula marismortui [TaxId: 2238]
X d1m90x_ Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Archaeal L30 (L30a) Archaeon Haloarcula marismortui [TaxId: 2238]
Y d1m90y_ Alpha and beta proteins (a+b) Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Archaeon Haloarcula marismortui [TaxId: 2238]
Z d1m90z_ Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e Archaeon Haloarcula marismortui [TaxId: 2238]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
1 1m90100 Mainly Beta Single Sheet N-terminal domain of TfIIb
2 1m90200 Mainly Beta Single Sheet N-terminal domain of TfIIb
3 1m90300 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain; Chain: I; Ribosomal protein L39e
4 1m90400 Alpha Beta Roll Nuclear Transport Factor 2; Chain: A,
C1 1m90C01 Mainly Beta Roll SH3 type barrels.
C2 1m90C02 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
C3 1m90C03 Few Secondary Structures Irregular Ribosomal protein L2; domain 3 Ribosomal protein L2, domain 3
D1 1m90D01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3 Translation factors
D2 1m90D02 Alpha Beta 2-Layer Sandwich Ribosomal Protein L3; Chain: B; domain 2,
D3 1m90D03 Few Secondary Structures Irregular Ribosomal protein L3; domain 3 Ribosomal protein L3, domain 3
E 1m90E00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L4; Chain: A;
F 1m90F00 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A,
G1 1m90G01 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
G2 1m90G02 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
H 1m90H00 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A;
I 1m90I00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A
J 1m90J00 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
K 1m90K00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A;
L 1m90L00 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal Protein L14;
M1 1m90M01 Few Secondary Structures Irregular Molecule: Ribosomal Protein L15; Chain: K; domain 1
M2 1m90M02 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
N 1m90N00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein l15e
O 1m90O00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
P 1m90P00 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
Q1 1m90Q01 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1
Q2 1m90Q02 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
Q3 1m90Q03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces Single Heli x bin
R 1m90R00 Mainly Beta Roll SH3 type barrels. Myosin S1 fragment SH3-like barrel
S 1m90S00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal Protein L22; Chain A
T 1m90T00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
U 1m90U00 Mainly Beta Roll SH3 type barrels.
V 1m90V00 Mainly Beta Roll Ribosomal Protein L24e; Chain: T;
W 1m90W00 Mainly Alpha Orthogonal Bundle Helix Hairpins
X1 1m90X01 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A,
X2 1m90X02 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3
Y 1m90Y00 Alpha Beta Roll Ribosomal Protein L31e; Chain: W;

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
R PF01157 Ribosomal_L21e Ribosomal protein L21e Family
X PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e Domain This family includes prokaryotic L30 and eukaryotic L7. PFAM PF00327
3 PF00832 Ribosomal_L39 Ribosomal L39 protein Family
N PF00827 Ribosomal_L15e Ribosomal L15 Family
O PF00861 Ribosomal_L18p Ribosomal L18p/L5e family Family
Y PF01198 Ribosomal_L31e Ribosomal protein L31e Family
C PF03947 Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain Domain PFAM PF03947
I PF00466 Ribosomal_L10 Ribosomal protein L10 Family
K PF00572 Ribosomal_L13 Ribosomal protein L13 Family
G PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
M PF00828 Ribosomal_L18e Ribosomal protein L18e/L15 Family
Q PF01280 Ribosomal_L19e Ribosomal protein L19e Family
4 PF00935 Ribosomal_L44 Ribosomal protein L44 Family
F PF00673 Ribosomal_L5_C ribosomal L5P family C-terminus Domain This region is found associated with Pfam:PF00281. PFAM PF00673
G PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
D PF00297 Ribosomal_L3 Ribosomal protein L3 Family
F PF00281 Ribosomal_L5 Ribosomal protein L5 Domain PFAM PF00281
1 PF01780 Ribosomal_L37ae Ribosomal L37ae protein family Family
H PF01248 Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Domain This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. PFAM PF01248
T PF00276 Ribosomal_L23 Ribosomal protein L23 Family
E PF00573 Ribosomal_L4 Ribosomal protein L4/L1 family Family
P PF00828 Ribosomal_L18e Ribosomal protein L18e/L15 Family
Z PF01655 Ribosomal_L32e Ribosomal protein L32 Family
L PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e Domain PFAM PF00238
W PF00831 Ribosomal_L29 Ribosomal L29 protein Family
C PF00181 Ribosomal_L2 Ribosomal Proteins L2, RNA binding domain Domain PFAM PF00181
V PF01246 Ribosomal_L24e Ribosomal protein L24e Family
J PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e Family
2 PF01907 Ribosomal_L37e Ribosomal protein L37e Family
U PF00467 KOW KOW motif Family
S PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e Domain This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. PFAM PF00237

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 23S RRNA (1M90:A)
  • none
  • none
  • none
B 5S RRNA (1M90:B)
  • none
  • none
  • none
5 CCA (1M90:5)
  • none
  • none
  • none
C RIBOSOMAL PROTEIN L2 (1M90:C)
D RIBOSOMAL PROTEIN L3 (1M90:D)
E RIBOSOMAL PROTEIN L4 (1M90:E)
F RIBOSOMAL PROTEIN L5 (1M90:F)
G RIBOSOMAL PROTEIN L6 (1M90:G)
H RIBOSOMAL PROTEIN L7AE (1M90:H)
I RIBOSOMAL PROTEIN L10 (1M90:I)
J RIBOSOMAL PROTEIN L10E (1M90:J)
K RIBOSOMAL PROTEIN L13 (1M90:K)
L RIBOSOMAL PROTEIN L14 (1M90:L)
M RIBOSOMAL PROTEIN L15 (1M90:M)
N RIBOSOMAL PROTEIN L15E (1M90:N)
O RIBOSOMAL PROTEIN L18 (1M90:O)
P RIBOSOMAL PROTEIN L18E (1M90:P)
Q RIBOSOMAL PROTEIN L19E (1M90:Q)
R RIBOSOMAL PROTEIN L21E (1M90:R)
S RIBOSOMAL PROTEIN L22 (1M90:S)
T RIBOSOMAL PROTEIN L23 (1M90:T)
U RIBOSOMAL PROTEIN L24 (1M90:U)
V RIBOSOMAL PROTEIN L24E (1M90:V)
W RIBOSOMAL PROTEIN L29 (1M90:W)
X RIBOSOMAL PROTEIN L30 (1M90:X)
Y RIBOSOMAL PROTEIN L31E (1M90:Y)
Z RIBOSOMAL PROTEIN L32E (1M90:Z)
1 RIBOSOMAL PROTEIN L37Ae (1M90:1)
2 RIBOSOMAL PROTEIN L37E (1M90:2)
3 RIBOSOMAL PROTEIN L39E (1M90:3)
4 RIBOSOMAL PROTEIN L44E (1M90:4)

Protein Modification Annotation

Type PDB Residue Nr. Description