Macromolecule Annotations for the Entities in PDB 1M8V

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1m8va_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
B d1m8vb_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
C d1m8vc_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
D d1m8vd_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
E d1m8ve_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
F d1m8vf_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
G d1m8vg_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
H d1m8vh_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
I d1m8vi_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
J d1m8vj_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
K d1m8vk_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
L d1m8vl_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
M d1m8vm_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
N d1m8vn_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF01423 LSM LSM domain Domain The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings. PFAM PF01423

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
O,P,Q,R,S,T,U 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3' (1M8V:O,P,Q,R,S,T,U)
  • none
  • none
  • none
A,B,C,D,E,F,G,H,I,J,K,L,M,N PUTATIVE SNRNP SM-LIKE PROTEIN (1M8V:A,B,C,D,E,F,G,H,I,J,K,L,M,N)
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description