Macromolecule Annotations for the Entities in PDB 1M5Q

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1m5q1_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
2 d1m5q2_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
A d1m5qa_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
B d1m5qb_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
C d1m5qc_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
D d1m5qd_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
E d1m5qe_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
F d1m5qf_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
G d1m5qg_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
H d1m5qh_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
I d1m5qi_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
J d1m5qj_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
K d1m5qk_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
L d1m5ql_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
M d1m5qm_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
N d1m5qn_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
O d1m5qo_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
P d1m5qp_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Q d1m5qq_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
R d1m5qr_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
S d1m5qs_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
T d1m5qt_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
U d1m5qu_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
V d1m5qv_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
W d1m5qw_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
X d1m5qx_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Y d1m5qy_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Z d1m5qz_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
11 1m5q101 Mainly Beta Roll SH3 type barrels.
12 1m5q102 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
21 1m5q201 Mainly Beta Roll SH3 type barrels.
22 1m5q202 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
A1 1m5qA01 Mainly Beta Roll SH3 type barrels.
A2 1m5qA02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
B1 1m5qB01 Mainly Beta Roll SH3 type barrels.
B2 1m5qB02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
C1 1m5qC01 Mainly Beta Roll SH3 type barrels.
C2 1m5qC02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
D1 1m5qD01 Mainly Beta Roll SH3 type barrels.
D2 1m5qD02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
E1 1m5qE01 Mainly Beta Roll SH3 type barrels.
E2 1m5qE02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
F1 1m5qF01 Mainly Beta Roll SH3 type barrels.
F2 1m5qF02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
G1 1m5qG01 Mainly Beta Roll SH3 type barrels.
G2 1m5qG02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
H1 1m5qH01 Mainly Beta Roll SH3 type barrels.
H2 1m5qH02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
I1 1m5qI01 Mainly Beta Roll SH3 type barrels.
I2 1m5qI02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
J1 1m5qJ01 Mainly Beta Roll SH3 type barrels.
J2 1m5qJ02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
K1 1m5qK01 Mainly Beta Roll SH3 type barrels.
K2 1m5qK02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
L1 1m5qL01 Mainly Beta Roll SH3 type barrels.
L2 1m5qL02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
M1 1m5qM01 Mainly Beta Roll SH3 type barrels.
M2 1m5qM02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
N1 1m5qN01 Mainly Beta Roll SH3 type barrels.
N2 1m5qN02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
O1 1m5qO01 Mainly Beta Roll SH3 type barrels.
O2 1m5qO02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
P1 1m5qP01 Mainly Beta Roll SH3 type barrels.
P2 1m5qP02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
Q1 1m5qQ01 Mainly Beta Roll SH3 type barrels.
Q2 1m5qQ02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
R1 1m5qR01 Mainly Beta Roll SH3 type barrels.
R2 1m5qR02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
S1 1m5qS01 Mainly Beta Roll SH3 type barrels.
S2 1m5qS02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
T1 1m5qT01 Mainly Beta Roll SH3 type barrels.
T2 1m5qT02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
U1 1m5qU01 Mainly Beta Roll SH3 type barrels.
U2 1m5qU02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
V1 1m5qV01 Mainly Beta Roll SH3 type barrels.
V2 1m5qV02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
W1 1m5qW01 Mainly Beta Roll SH3 type barrels.
W2 1m5qW02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
X1 1m5qX01 Mainly Beta Roll SH3 type barrels.
X2 1m5qX02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
Y1 1m5qY01 Mainly Beta Roll SH3 type barrels.
Y2 1m5qY02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
Z1 1m5qZ01 Mainly Beta Roll SH3 type barrels.
Z2 1m5qZ02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
1 PF14894 Lsm_C Lsm C-terminal Domain This domain is found at the C-terminus of archaeal Lsm (like-Sm) proteins [1]. PFAM PF14894
1 PF14438 SM-ATX Ataxin 2 SM domain Domain This SM domain is found in Ataxin-2 [1]. PFAM PF14438

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
1,2,A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z small nuclear ribonucleoprotein homolog (1M5Q:1,2,A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z)
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description