Macromolecule Annotations for the Entities in PDB 1M5Q

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1m5q1_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
2 d1m5q2_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
A d1m5qa_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
B d1m5qb_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
C d1m5qc_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
D d1m5qd_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
E d1m5qe_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
F d1m5qf_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
G d1m5qg_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
H d1m5qh_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
I d1m5qi_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
J d1m5qj_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
K d1m5qk_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
L d1m5ql_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
M d1m5qm_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
N d1m5qn_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
O d1m5qo_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
P d1m5qp_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Q d1m5qq_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
R d1m5qr_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
S d1m5qs_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
T d1m5qt_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
U d1m5qu_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
V d1m5qv_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
W d1m5qw_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
X d1m5qx_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Y d1m5qy_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Z d1m5qz_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Sm-Like archaeal protein Smap3 Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
11 1m5q101 Mainly Beta Roll SH3 type barrels.
12 1m5q102 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
21 1m5q201 Mainly Beta Roll SH3 type barrels.
22 1m5q202 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
A1 1m5qA01 Mainly Beta Roll SH3 type barrels.
A2 1m5qA02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
B1 1m5qB01 Mainly Beta Roll SH3 type barrels.
B2 1m5qB02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
C1 1m5qC01 Mainly Beta Roll SH3 type barrels.
C2 1m5qC02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
D1 1m5qD01 Mainly Beta Roll SH3 type barrels.
D2 1m5qD02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
E1 1m5qE01 Mainly Beta Roll SH3 type barrels.
E2 1m5qE02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
F1 1m5qF01 Mainly Beta Roll SH3 type barrels.
F2 1m5qF02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
G1 1m5qG01 Mainly Beta Roll SH3 type barrels.
G2 1m5qG02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
H1 1m5qH01 Mainly Beta Roll SH3 type barrels.
H2 1m5qH02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
I1 1m5qI01 Mainly Beta Roll SH3 type barrels.
I2 1m5qI02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
J1 1m5qJ01 Mainly Beta Roll SH3 type barrels.
J2 1m5qJ02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
K1 1m5qK01 Mainly Beta Roll SH3 type barrels.
K2 1m5qK02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
L1 1m5qL01 Mainly Beta Roll SH3 type barrels.
L2 1m5qL02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
M1 1m5qM01 Mainly Beta Roll SH3 type barrels.
M2 1m5qM02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
N1 1m5qN01 Mainly Beta Roll SH3 type barrels.
N2 1m5qN02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
O1 1m5qO01 Mainly Beta Roll SH3 type barrels.
O2 1m5qO02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
P1 1m5qP01 Mainly Beta Roll SH3 type barrels.
P2 1m5qP02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
Q1 1m5qQ01 Mainly Beta Roll SH3 type barrels.
Q2 1m5qQ02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
R1 1m5qR01 Mainly Beta Roll SH3 type barrels.
R2 1m5qR02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
S1 1m5qS01 Mainly Beta Roll SH3 type barrels.
S2 1m5qS02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
T1 1m5qT01 Mainly Beta Roll SH3 type barrels.
T2 1m5qT02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
U1 1m5qU01 Mainly Beta Roll SH3 type barrels.
U2 1m5qU02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
V1 1m5qV01 Mainly Beta Roll SH3 type barrels.
V2 1m5qV02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
W1 1m5qW01 Mainly Beta Roll SH3 type barrels.
W2 1m5qW02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
X1 1m5qX01 Mainly Beta Roll SH3 type barrels.
X2 1m5qX02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
Y1 1m5qY01 Mainly Beta Roll SH3 type barrels.
Y2 1m5qY02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain
Z1 1m5qZ01 Mainly Beta Roll SH3 type barrels.
Z2 1m5qZ02 Alpha Beta 2-Layer Sandwich TATA-Binding Protein sm-like archaeal protein, C-terminal domain

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
1,2,A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z small nuclear ribonucleoprotein homolog (1M5Q:1,2,A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description