Macromolecule Annotations for the Entities in PDB 1M2V

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A524-626 d1m2va1 All alpha proteins ERP29 C domain-like Helical domain of Sec23/24 Helical domain of Sec23/24 Sec23 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
A2-44,A391-523 d1m2va2 All beta proteins Common fold of diphtheria toxin/transcription factors/cytochrome f beta-sandwich domain of Sec23/24 beta-sandwich domain of Sec23/24 Sec23 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
A120-390 d1m2va3 Alpha and beta proteins (a/b) vWA-like vWA-like Trunk domain of Sec23/24 Sec23 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
A627-768 d1m2va4 Alpha and beta proteins (a+b) Gelsolin-like C-terminal, gelsolin-like domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 Sec23 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
A45-119 d1m2va5 Small proteins Rubredoxin-like Zn-finger domain of Sec23/24 Zn-finger domain of Sec23/24 Sec23 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
B647-753 d1m2vb1 All alpha proteins ERP29 C domain-like Helical domain of Sec23/24 Helical domain of Sec23/24 Sec24 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
B61-215,B553-646 d1m2vb2 All beta proteins Common fold of diphtheria toxin/transcription factors/cytochrome f beta-sandwich domain of Sec23/24 beta-sandwich domain of Sec23/24 Sec24 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
B301-552 d1m2vb3 Alpha and beta proteins (a/b) vWA-like vWA-like Trunk domain of Sec23/24 Sec24 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
B754-926 d1m2vb4 Alpha and beta proteins (a+b) Gelsolin-like C-terminal, gelsolin-like domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 Sec24 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
B216-300 d1m2vb5 Small proteins Rubredoxin-like Zn-finger domain of Sec23/24 Zn-finger domain of Sec23/24 Sec24 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF08033 Sec23_BS Sec23/Sec24 beta-sandwich domain Domain PFAM PF08033
A PF04815 Sec23_helical Sec23/Sec24 helical domain Domain COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is composed of five alpha helices. PFAM PF04815
B PF00626 Gelsolin Gelsolin repeat Domain PFAM PF00626
B PF04815 Sec23_helical Sec23/Sec24 helical domain Domain COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is composed of five alpha helices. PFAM PF04815
B PF04810 zf-Sec23_Sec24 Sec23/Sec24 zinc finger Domain COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is found to be zinc binding domain. PFAM PF04810
B PF04811 Sec23_trunk Sec23/Sec24 trunk domain Domain COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. PFAM PF04811
A PF04810 zf-Sec23_Sec24 Sec23/Sec24 zinc finger Domain COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is found to be zinc binding domain. PFAM PF04810
A PF00626 Gelsolin Gelsolin repeat Domain PFAM PF00626
A PF08033 Sec23_BS Sec23/Sec24 beta-sandwich domain Domain PFAM PF08033
A PF04811 Sec23_trunk Sec23/Sec24 trunk domain Domain COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. PFAM PF04811

Protein Modification Annotation

Type PDB Residue Nr. Description