Macromolecule Annotations for the Entities in PDB 1M2O

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A524-626 d1m2oa1 All alpha proteins ERP29 C domain-like Helical domain of Sec23/24 Helical domain of Sec23/24 Sec23 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
A2-44,A391-523 d1m2oa2 All beta proteins Common fold of diphtheria toxin/transcription factors/cytochrome f beta-sandwich domain of Sec23/24 beta-sandwich domain of Sec23/24 Sec23 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
A120-390 d1m2oa3 Alpha and beta proteins (a/b) vWA-like vWA-like Trunk domain of Sec23/24 Sec23 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
A627-765 d1m2oa4 Alpha and beta proteins (a+b) Gelsolin-like C-terminal, gelsolin-like domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 Sec23 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
A45-119 d1m2oa5 Small proteins Rubredoxin-like Zn-finger domain of Sec23/24 Zn-finger domain of Sec23/24 Sec23 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
B d1m2ob_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases G proteins SAR1 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
C524-626 d1m2oc1 All alpha proteins ERP29 C domain-like Helical domain of Sec23/24 Helical domain of Sec23/24 Sec23 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
C2-44,C391-523 d1m2oc2 All beta proteins Common fold of diphtheria toxin/transcription factors/cytochrome f beta-sandwich domain of Sec23/24 beta-sandwich domain of Sec23/24 Sec23 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
C120-390 d1m2oc3 Alpha and beta proteins (a/b) vWA-like vWA-like Trunk domain of Sec23/24 Sec23 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
C627-765 d1m2oc4 Alpha and beta proteins (a+b) Gelsolin-like C-terminal, gelsolin-like domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 Sec23 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
C45-119 d1m2oc5 Small proteins Rubredoxin-like Zn-finger domain of Sec23/24 Zn-finger domain of Sec23/24 Sec23 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
D d1m2od_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases G proteins SAR1 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF04815 Sec23_helical Sec23/Sec24 helical domain Domain COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is composed of five alpha helices. PFAM PF04815
A PF00626 Gelsolin Gelsolin repeat Domain PFAM PF00626
A PF04810 zf-Sec23_Sec24 Sec23/Sec24 zinc finger Domain COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is found to be zinc binding domain. PFAM PF04810
A PF04811 Sec23_trunk Sec23/Sec24 trunk domain Domain COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. PFAM PF04811
B PF00025 Arf ADP-ribosylation factor family Domain Pfam combines a number of different Prosite families together PFAM PF00025
A PF08033 Sec23_BS Sec23/Sec24 beta-sandwich domain Domain PFAM PF08033

Protein Modification Annotation

Type PDB Residue Nr. Description