Macromolecule Annotations for the Entities in PDB 1M1K

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1m1k1_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae Archaeon Haloarcula marismortui [TaxId: 2238]
2 d1m1k2_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37e Ribosomal protein L37e Archaeon Haloarcula marismortui [TaxId: 2238]
3 d1m1k3_ All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e Archaeon Haloarcula marismortui [TaxId: 2238]
4 d1m1k4_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L44e Ribosomal protein L44e Archaeon Haloarcula marismortui [TaxId: 2238]
C91-237 d1m1kc1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
C1-90 d1m1kc2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
D d1m1kd_ All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 Archaeon Haloarcula marismortui [TaxId: 2238]
E d1m1ke_ Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Archaeon Haloarcula marismortui [TaxId: 2238]
F d1m1kf_ Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 Archaeon Haloarcula marismortui [TaxId: 2238]
G1-79 d1m1kg1 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
G80-172 d1m1kg2 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
H d1m1kh_ Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae Archaeon Haloarcula marismortui [TaxId: 2238]
I d1m1ki_ Peptides Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Archaeon Haloarcula marismortui [TaxId: 2238]
J d1m1kj_ Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e Archaeon Haloarcula marismortui [TaxId: 2238]
K d1m1kk_ Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Archaeon Haloarcula marismortui [TaxId: 2238]
L d1m1kl_ All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Archaeon Haloarcula marismortui [TaxId: 2238]
M d1m1km_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) Archaeon Haloarcula marismortui [TaxId: 2238]
N d1m1kn_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L15e Ribosomal protein L15e Archaeon Haloarcula marismortui [TaxId: 2238]
O d1m1ko_ Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) Archaeon Haloarcula marismortui [TaxId: 2238]
P d1m1kp_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L18e Archaeon Haloarcula marismortui [TaxId: 2238]
Q d1m1kq_ All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Archaeon Haloarcula marismortui [TaxId: 2238]
R d1m1kr_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L21e Archaeon Haloarcula marismortui [TaxId: 2238]
S d1m1ks_ Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Archaeon Haloarcula marismortui [TaxId: 2238]
T d1m1kt_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 Archaeon Haloarcula marismortui [TaxId: 2238]
U d1m1ku_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) Archaeon Haloarcula marismortui [TaxId: 2238]
V d1m1kv_ Small proteins Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) Ribosomal protein L24e Ribosomal protein L24e Archaeon Haloarcula marismortui [TaxId: 2238]
W d1m1kw_ All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Archaeon Haloarcula marismortui [TaxId: 2238]
X d1m1kx_ Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Archaeal L30 (L30a) Archaeon Haloarcula marismortui [TaxId: 2238]
Y d1m1ky_ Alpha and beta proteins (a+b) Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Archaeon Haloarcula marismortui [TaxId: 2238]
Z d1m1kz_ Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e Archaeon Haloarcula marismortui [TaxId: 2238]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
1 1m1k100 Mainly Beta Single Sheet N-terminal domain of TfIIb
2 1m1k200 Mainly Beta Single Sheet N-terminal domain of TfIIb
3 1m1k300 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain; Chain: I; Ribosomal protein L39e
4 1m1k400 Alpha Beta Roll Nuclear Transport Factor 2; Chain: A,
C1 1m1kC01 Mainly Beta Roll SH3 type barrels.
C2 1m1kC02 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
C3 1m1kC03 Few Secondary Structures Irregular Ribosomal protein L2; domain 3 Ribosomal protein L2, domain 3
D1 1m1kD01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3 Translation factors
D2 1m1kD02 Alpha Beta 2-Layer Sandwich Ribosomal Protein L3; Chain: B; domain 2,
D3 1m1kD03 Few Secondary Structures Irregular Ribosomal protein L3; domain 3 Ribosomal protein L3, domain 3
E 1m1kE00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L4; Chain: A;
F 1m1kF00 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A,
G1 1m1kG01 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
G2 1m1kG02 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
H 1m1kH00 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A;
I 1m1kI00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A
J 1m1kJ00 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
K 1m1kK00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A;
L 1m1kL00 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal Protein L14;
M1 1m1kM01 Few Secondary Structures Irregular Molecule: Ribosomal Protein L15; Chain: K; domain 1
M2 1m1kM02 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
N 1m1kN00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein l15e
O 1m1kO00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
P 1m1kP00 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
Q1 1m1kQ01 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1
Q2 1m1kQ02 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
Q3 1m1kQ03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces Single Heli x bin
R 1m1kR00 Mainly Beta Roll SH3 type barrels. Myosin S1 fragment SH3-like barrel
S 1m1kS00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal Protein L22; Chain A
T 1m1kT00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
U 1m1kU00 Mainly Beta Roll SH3 type barrels.
V 1m1kV00 Mainly Beta Roll Ribosomal Protein L24e; Chain: T;
W 1m1kW00 Mainly Alpha Orthogonal Bundle Helix Hairpins
X1 1m1kX01 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A,
X2 1m1kX02 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3
Y 1m1kY00 Alpha Beta Roll Ribosomal Protein L31e; Chain: W;

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 23S RRNA (1M1K:A)
  • none
  • none
  • none
B 5S RRNA (1M1K:B)
  • none
  • none
  • none
C RIBOSOMAL PROTEIN L2 (1M1K:C)
D RIBOSOMAL PROTEIN L3 (1M1K:D)
E RIBOSOMAL PROTEIN L4 (1M1K:E)
F RIBOSOMAL PROTEIN L5 (1M1K:F)
G RIBOSOMAL PROTEIN L6 (1M1K:G)
H RIBOSOMAL PROTEIN L7AE (1M1K:H)
I RIBOSOMAL PROTEIN L10 (1M1K:I)
J RIBOSOMAL PROTEIN L10E (1M1K:J)
K RIBOSOMAL PROTEIN L13 (1M1K:K)
L RIBOSOMAL PROTEIN L14 (1M1K:L)
M RIBOSOMAL PROTEIN L15 (1M1K:M)
N RIBOSOMAL PROTEIN L15E (1M1K:N)
O RIBOSOMAL PROTEIN L18 (1M1K:O)
P RIBOSOMAL PROTEIN L18E (1M1K:P)
Q RIBOSOMAL PROTEIN L19E (1M1K:Q)
R RIBOSOMAL PROTEIN L21E (1M1K:R)
S RIBOSOMAL PROTEIN L22 (1M1K:S)
T RIBOSOMAL PROTEIN L23 (1M1K:T)
U RIBOSOMAL PROTEIN L24 (1M1K:U)
V RIBOSOMAL PROTEIN L24E (1M1K:V)
W RIBOSOMAL PROTEIN L29 (1M1K:W)
X RIBOSOMAL PROTEIN L30 (1M1K:X)
Y RIBOSOMAL PROTEIN L31E (1M1K:Y)
Z RIBOSOMAL PROTEIN L32E (1M1K:Z)
1 RIBOSOMAL PROTEIN L37Ae (1M1K:1)
2 RIBOSOMAL PROTEIN L37E (1M1K:2)
3 RIBOSOMAL PROTEIN L39E (1M1K:3)
4 RIBOSOMAL PROTEIN L44E (1M1K:4)

Protein Modification Annotation

Type PDB Residue Nr. Description