Macromolecule Annotations for the Entities in PDB 1M1J

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1m1ja_ Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen alpha chain Chicken (Gallus gallus) [TaxId: 9031]
B200-464 d1m1jb1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Chicken (Gallus gallus), beta [TaxId: 9031]
B63-199 d1m1jb2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen beta chain Chicken (Gallus gallus) [TaxId: 9031]
C142-393 d1m1jc1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Chicken (Gallus gallus), gamma [TaxId: 9031]
C4-141 d1m1jc2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen gamma chain Chicken (Gallus gallus) [TaxId: 9031]
D d1m1jd_ Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen alpha chain Chicken (Gallus gallus) [TaxId: 9031]
E200-463 d1m1je1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Chicken (Gallus gallus), beta [TaxId: 9031]
E63-199 d1m1je2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen beta chain Chicken (Gallus gallus) [TaxId: 9031]
F142-393 d1m1jf1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Chicken (Gallus gallus), gamma [TaxId: 9031]
F5-141 d1m1jf2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen gamma chain Chicken (Gallus gallus) [TaxId: 9031]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A 1m1jA00 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
B1 1m1jB01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
B2 1m1jB02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
B3 1m1jB03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
C1 1m1jC01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
C2 1m1jC02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
C3 1m1jC03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
D 1m1jD00 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
E1 1m1jE01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
E2 1m1jE02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
E3 1m1jE03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
F1 1m1jF01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
F2 1m1jF02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
F3 1m1jF03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
C PF08702 Fib_alpha Fibrinogen alpha/beta chain family Domain Fibrinogen is a protein involved in platelet aggregation and is essential for the coagulation of blood. This domain forms part of the central coiled coiled region of the protein which is formed from two sets of three non-identical chains (alpha, beta and gamma). PFAM PF08702
C PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain Domain PFAM PF00147
B PF08702 Fib_alpha Fibrinogen alpha/beta chain family Domain Fibrinogen is a protein involved in platelet aggregation and is essential for the coagulation of blood. This domain forms part of the central coiled coiled region of the protein which is formed from two sets of three non-identical chains (alpha, beta and gamma). PFAM PF08702
A PF08702 Fib_alpha Fibrinogen alpha/beta chain family Domain Fibrinogen is a protein involved in platelet aggregation and is essential for the coagulation of blood. This domain forms part of the central coiled coiled region of the protein which is formed from two sets of three non-identical chains (alpha, beta and gamma). PFAM PF08702
B PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain Domain PFAM PF00147

Protein Modification Annotation

Type PDB Residue Nr. Description