Macromolecule Annotations for the Entities in PDB 1LWU

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1lwua_ Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen alpha chain Sea lamprey (Petromyzon marinus) [TaxId: 7757]
B219-477 d1lwub1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Sea lamprey (Petromyzon marinus), beta [TaxId: 7757]
B163-218 d1lwub2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen beta chain Sea lamprey (Petromyzon marinus) [TaxId: 7757]
C138-399 d1lwuc1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Sea lamprey (Petromyzon marinus), gamma [TaxId: 7757]
C83-137 d1lwuc2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen gamma chain Sea lamprey (Petromyzon marinus) [TaxId: 7757]
D d1lwud_ Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen alpha chain Sea lamprey (Petromyzon marinus) [TaxId: 7757]
E219-477 d1lwue1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Sea lamprey (Petromyzon marinus), beta [TaxId: 7757]
E163-218 d1lwue2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen beta chain Sea lamprey (Petromyzon marinus) [TaxId: 7757]
F138-399 d1lwuf1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Sea lamprey (Petromyzon marinus), gamma [TaxId: 7757]
F83-137 d1lwuf2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen gamma chain Sea lamprey (Petromyzon marinus) [TaxId: 7757]
G d1lwug_ Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen alpha chain Sea lamprey (Petromyzon marinus) [TaxId: 7757]
H219-477 d1lwuh1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Sea lamprey (Petromyzon marinus), beta [TaxId: 7757]
H163-218 d1lwuh2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen beta chain Sea lamprey (Petromyzon marinus) [TaxId: 7757]
I138-395 d1lwui1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Sea lamprey (Petromyzon marinus), gamma [TaxId: 7757]
I83-137 d1lwui2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen gamma chain Sea lamprey (Petromyzon marinus) [TaxId: 7757]
J d1lwuj_ Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen alpha chain Sea lamprey (Petromyzon marinus) [TaxId: 7757]
K219-477 d1lwuk1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Sea lamprey (Petromyzon marinus), beta [TaxId: 7757]
K163-218 d1lwuk2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen beta chain Sea lamprey (Petromyzon marinus) [TaxId: 7757]
L138-395 d1lwul1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Sea lamprey (Petromyzon marinus), gamma [TaxId: 7757]
L83-137 d1lwul2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen gamma chain Sea lamprey (Petromyzon marinus) [TaxId: 7757]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A 1lwuA00 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
B1 1lwuB01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
B2 1lwuB02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
B3 1lwuB03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
C1 1lwuC01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
C2 1lwuC02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
C3 1lwuC03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
D 1lwuD00 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
E1 1lwuE01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
E2 1lwuE02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
E3 1lwuE03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
F1 1lwuF01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
F2 1lwuF02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
F3 1lwuF03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
G 1lwuG00 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
H1 1lwuH01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
H2 1lwuH02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
H3 1lwuH03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
I1 1lwuI01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
I2 1lwuI02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
I3 1lwuI03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
J 1lwuJ00 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
K1 1lwuK01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
K2 1lwuK02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
K3 1lwuK03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
L1 1lwuL01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
L2 1lwuL02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
L3 1lwuL03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF08702 Fib_alpha Fibrinogen alpha/beta chain family Domain Fibrinogen is a protein involved in platelet aggregation and is essential for the coagulation of blood. This domain forms part of the central coiled coiled region of the protein which is formed from two sets of three non-identical chains (alpha, beta and gamma). PFAM PF08702
C PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain Domain PFAM PF00147
B PF08702 Fib_alpha Fibrinogen alpha/beta chain family Domain Fibrinogen is a protein involved in platelet aggregation and is essential for the coagulation of blood. This domain forms part of the central coiled coiled region of the protein which is formed from two sets of three non-identical chains (alpha, beta and gamma). PFAM PF08702
B PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain Domain PFAM PF00147

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,D,G,J Fibrinogen alpha-1 chain (1LWU:A,D,G,J)
B,E,H,K Fibrinogen beta chain (1LWU:B,E,H,K)
C,F,I,L Fibrinogen gamma chain (1LWU:C,F,I,L)
  • none
  • none
  • none
M,N,O,P Ligand Gly-His-Arg-Pro-NH2 (1LWU:M,N,O,P)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description