Macromolecule Annotations for the Entities in PDB 1LVO

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1lvoa_ All beta proteins Trypsin-like serine proteases Trypsin-like serine proteases Viral cysteine protease of trypsin fold Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) Transmissible gastroenteritis virus [TaxId: 11149]
B d1lvob_ All beta proteins Trypsin-like serine proteases Trypsin-like serine proteases Viral cysteine protease of trypsin fold Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) Transmissible gastroenteritis virus [TaxId: 11149]
C d1lvoc_ All beta proteins Trypsin-like serine proteases Trypsin-like serine proteases Viral cysteine protease of trypsin fold Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) Transmissible gastroenteritis virus [TaxId: 11149]
D d1lvod_ All beta proteins Trypsin-like serine proteases Trypsin-like serine proteases Viral cysteine protease of trypsin fold Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) Transmissible gastroenteritis virus [TaxId: 11149]
E d1lvoe_ All beta proteins Trypsin-like serine proteases Trypsin-like serine proteases Viral cysteine protease of trypsin fold Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) Transmissible gastroenteritis virus [TaxId: 11149]
F d1lvof_ All beta proteins Trypsin-like serine proteases Trypsin-like serine proteases Viral cysteine protease of trypsin fold Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) Transmissible gastroenteritis virus [TaxId: 11149]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 1lvoA01 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteases
A2 1lvoA02 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteases
A3 1lvoA03 Mainly Alpha Orthogonal Bundle main proteinase (3clpro) structure, domain 3 main proteinase (3clpro) structure, domain 3
B1 1lvoB01 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteases
B2 1lvoB02 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteases
B3 1lvoB03 Mainly Alpha Orthogonal Bundle main proteinase (3clpro) structure, domain 3 main proteinase (3clpro) structure, domain 3
C1 1lvoC01 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteases
C2 1lvoC02 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteases
C3 1lvoC03 Mainly Alpha Orthogonal Bundle main proteinase (3clpro) structure, domain 3 main proteinase (3clpro) structure, domain 3
D1 1lvoD01 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteases
D2 1lvoD02 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteases
D3 1lvoD03 Mainly Alpha Orthogonal Bundle main proteinase (3clpro) structure, domain 3 main proteinase (3clpro) structure, domain 3
E1 1lvoE01 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteases
E2 1lvoE02 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteases
E3 1lvoE03 Mainly Alpha Orthogonal Bundle main proteinase (3clpro) structure, domain 3 main proteinase (3clpro) structure, domain 3
F1 1lvoF01 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteases
F2 1lvoF02 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteases
F3 1lvoF03 Mainly Alpha Orthogonal Bundle main proteinase (3clpro) structure, domain 3 main proteinase (3clpro) structure, domain 3

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF05409 Peptidase_C30 Coronavirus endopeptidase C30 Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B,C,D,E,F Replicase, hydrolase domain (1LVO:A,B,C,D,E,F)
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description