Macromolecule Annotations for the Entities in PDB 1LTJ

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1ltja_ Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen alpha chain Human (Homo sapiens) [TaxId: 9606]
B200-458 d1ltjb1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Human (Homo sapiens), beta [TaxId: 9606]
B161-199 d1ltjb2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen beta chain Human (Homo sapiens) [TaxId: 9606]
C142-394 d1ltjc1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Human (Homo sapiens), gamma [TaxId: 9606]
C96-141 d1ltjc2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen gamma chain Human (Homo sapiens) [TaxId: 9606]
D d1ltjd_ Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen alpha chain Human (Homo sapiens) [TaxId: 9606]
E200-458 d1ltje1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Human (Homo sapiens), beta [TaxId: 9606]
E165-199 d1ltje2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen beta chain Human (Homo sapiens) [TaxId: 9606]
F142-394 d1ltjf1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Human (Homo sapiens), gamma [TaxId: 9606]
F110-141 d1ltjf2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen gamma chain Human (Homo sapiens) [TaxId: 9606]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A 1ltjA00 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
B1 1ltjB01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
B2 1ltjB02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
B3 1ltjB03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
C1 1ltjC01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
C2 1ltjC02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
C3 1ltjC03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
D 1ltjD00 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
E1 1ltjE01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
E2 1ltjE02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
E3 1ltjE03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
F1 1ltjF01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
F2 1ltjF02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
F3 1ltjF03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
C PF08702 Fib_alpha Fibrinogen alpha/beta chain family Domain Fibrinogen is a protein involved in platelet aggregation and is essential for the coagulation of blood. This domain forms part of the central coiled coiled region of the protein which is formed from two sets of three non-identical chains (alpha, beta and gamma). PFAM PF08702
B PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain Domain PFAM PF00147
C PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain Domain PFAM PF00147
A PF08702 Fib_alpha Fibrinogen alpha/beta chain family Domain Fibrinogen is a protein involved in platelet aggregation and is essential for the coagulation of blood. This domain forms part of the central coiled coiled region of the protein which is formed from two sets of three non-identical chains (alpha, beta and gamma). PFAM PF08702
B PF08702 Fib_alpha Fibrinogen alpha/beta chain family Domain Fibrinogen is a protein involved in platelet aggregation and is essential for the coagulation of blood. This domain forms part of the central coiled coiled region of the protein which is formed from two sets of three non-identical chains (alpha, beta and gamma). PFAM PF08702

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,D Fibrinogen alpha/alpha-E chain (1LTJ:A,D)
B,E Fibrinogen Beta chain (1LTJ:B,E)
C,F Fibrinogen Gamma chain (1LTJ:C,F)
G,I Gly-Pro-Arg-Pro (1LTJ:G,I)
  • none
  • none
  • none
H,J Gly-His-Arg-Pro (1LTJ:H,J)
  • none
  • none
  • none
SUGAR (NAG-NAG-FUC) (1LTJ:)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description