Macromolecule Annotations for the Entities in PDB 1LT9

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1lt9a_ Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen alpha chain Human (Homo sapiens) [TaxId: 9606]
B200-458 d1lt9b1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Human (Homo sapiens), beta [TaxId: 9606]
B161-199 d1lt9b2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen beta chain Human (Homo sapiens) [TaxId: 9606]
C142-394 d1lt9c1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Human (Homo sapiens), gamma [TaxId: 9606]
C96-141 d1lt9c2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen gamma chain Human (Homo sapiens) [TaxId: 9606]
D d1lt9d_ Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen alpha chain Human (Homo sapiens) [TaxId: 9606]
E200-458 d1lt9e1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Human (Homo sapiens), beta [TaxId: 9606]
E165-199 d1lt9e2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen beta chain Human (Homo sapiens) [TaxId: 9606]
F142-394 d1lt9f1 Alpha and beta proteins (a+b) Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domain-like Fibrinogen C-terminal domains Human (Homo sapiens), gamma [TaxId: 9606]
F110-141 d1lt9f2 Coiled coil proteins Parallel coiled-coil Fibrinogen coiled-coil and central regions Fibrinogen coiled-coil and central regions Fibrinogen gamma chain Human (Homo sapiens) [TaxId: 9606]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A 1lt9A00 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
B1 1lt9B01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
B2 1lt9B02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
B3 1lt9B03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
C1 1lt9C01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
C2 1lt9C02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
C3 1lt9C03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
D 1lt9D00 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
E1 1lt9E01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
E2 1lt9E02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
E3 1lt9E03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
F1 1lt9F01 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1
F2 1lt9F02 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
F3 1lt9F03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF08702 Fib_alpha Fibrinogen alpha/beta chain family Domain Fibrinogen is a protein involved in platelet aggregation and is essential for the coagulation of blood. This domain forms part of the central coiled coiled region of the protein which is formed from two sets of three non-identical chains (alpha, beta and gamma). PFAM PF08702
A PF08702 Fib_alpha Fibrinogen alpha/beta chain family Domain Fibrinogen is a protein involved in platelet aggregation and is essential for the coagulation of blood. This domain forms part of the central coiled coiled region of the protein which is formed from two sets of three non-identical chains (alpha, beta and gamma). PFAM PF08702
C PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain Domain PFAM PF00147
B PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain Domain PFAM PF00147
C PF08702 Fib_alpha Fibrinogen alpha/beta chain family Domain Fibrinogen is a protein involved in platelet aggregation and is essential for the coagulation of blood. This domain forms part of the central coiled coiled region of the protein which is formed from two sets of three non-identical chains (alpha, beta and gamma). PFAM PF08702

Protein Modification Annotation

Type PDB Residue Nr. Description