Macromolecule Annotations for the Entities in PDB 1LNU

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A84-182 d1lnua1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC alpha chain, C-terminal domain Mouse (Mus musculus), I-A group [TaxId: 10090]
A1-83 d1lnua2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain Mouse (Mus musculus), I-AB [TaxId: 10090]
B121-217 d1lnub1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC beta chain, C-terminal domain Mouse (Mus musculus), I-A group [TaxId: 10090]
B1-120 d1lnub2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain Mouse (Mus musculus), I-AB [TaxId: 10090]
C84-182 d1lnuc1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC alpha chain, C-terminal domain Mouse (Mus musculus), I-A group [TaxId: 10090]
C1-83 d1lnuc2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain Mouse (Mus musculus), I-AB [TaxId: 10090]
D121-217 d1lnud1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC beta chain, C-terminal domain Mouse (Mus musculus), I-A group [TaxId: 10090]
D1-120 d1lnud2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain Mouse (Mus musculus), I-AB [TaxId: 10090]
E84-182 d1lnue1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC alpha chain, C-terminal domain Mouse (Mus musculus), I-A group [TaxId: 10090]
E1-83 d1lnue2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain Mouse (Mus musculus), I-AB [TaxId: 10090]
F121-217 d1lnuf1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC beta chain, C-terminal domain Mouse (Mus musculus), I-A group [TaxId: 10090]
F1-120 d1lnuf2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain Mouse (Mus musculus), I-AB [TaxId: 10090]
G84-182 d1lnug1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC alpha chain, C-terminal domain Mouse (Mus musculus), I-A group [TaxId: 10090]
G1-83 d1lnug2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain Mouse (Mus musculus), I-AB [TaxId: 10090]
H121-217 d1lnuh1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC beta chain, C-terminal domain Mouse (Mus musculus), I-A group [TaxId: 10090]
H1-120 d1lnuh2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain Mouse (Mus musculus), I-AB [TaxId: 10090]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 1lnuA01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
A2 1lnuA02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
B1 1lnuB01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
B2 1lnuB02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
C1 1lnuC01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
C2 1lnuC02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
D1 1lnuD01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
D2 1lnuD02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
E1 1lnuE01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
E2 1lnuE02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
F1 1lnuF01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
F2 1lnuF02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
G1 1lnuG01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
G2 1lnuG02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
H1 1lnuH01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
H2 1lnuH02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
A PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
B PF00969 MHC_II_beta Class II histocompatibility antigen, beta domain Domain PFAM PF00969
A PF00993 MHC_II_alpha Class II histocompatibility antigen, alpha domain Domain PFAM PF00993

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,C,E,G H-2 class II histocompatibility antigen, A- B alpha chain (1LNU:A,C,E,G)
  • none
B,D,F,H H-2 class II histocompatibility antigen, A beta chain (1LNU:B,D,F,H)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description