Macromolecule Annotations for the Entities in PDB 1LE9

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A192-291 d1le9a1 All beta proteins Immunoglobulin-like beta-sandwich E set domains NF-kappa-B/REL/DORSAL transcription factors, C- terminal domain p65 subunit of NF-kappa B (NFKB), dimerization domain Mouse (Mus musculus) [TaxId: 10090]
A19-191 d1le9a2 All beta proteins Common fold of diphtheria toxin/transcription factors/cytochrome f p53-like transcription factors Rel/Dorsal transcription factors, DNA-binding domain p65 subunit of NF-kappa B (NFKB), N-terminal domain Mouse (Mus musculus) [TaxId: 10090]
B251-350 d1le9b1 All beta proteins Immunoglobulin-like beta-sandwich E set domains NF-kappa-B/REL/DORSAL transcription factors, C- terminal domain p50 subunit of NF-kappa B transcription factor Mouse (Mus musculus) [TaxId: 10090]
B39-250 d1le9b2 All beta proteins Common fold of diphtheria toxin/transcription factors/cytochrome f p53-like transcription factors Rel/Dorsal transcription factors, DNA-binding domain p50 subunit of NF-kappa B (NFKB), N-terminal domain Mouse (Mus musculus) [TaxId: 10090]
E192-291 d1le9e1 All beta proteins Immunoglobulin-like beta-sandwich E set domains NF-kappa-B/REL/DORSAL transcription factors, C- terminal domain p65 subunit of NF-kappa B (NFKB), dimerization domain Mouse (Mus musculus) [TaxId: 10090]
E19-191 d1le9e2 All beta proteins Common fold of diphtheria toxin/transcription factors/cytochrome f p53-like transcription factors Rel/Dorsal transcription factors, DNA-binding domain p65 subunit of NF-kappa B (NFKB), N-terminal domain Mouse (Mus musculus) [TaxId: 10090]
F251-350 d1le9f1 All beta proteins Immunoglobulin-like beta-sandwich E set domains NF-kappa-B/REL/DORSAL transcription factors, C- terminal domain p50 subunit of NF-kappa B transcription factor Mouse (Mus musculus) [TaxId: 10090]
F39-250 d1le9f2 All beta proteins Common fold of diphtheria toxin/transcription factors/cytochrome f p53-like transcription factors Rel/Dorsal transcription factors, DNA-binding domain p50 subunit of NF-kappa B (NFKB), N-terminal domain Mouse (Mus musculus) [TaxId: 10090]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF00554 RHD Rel homology domain (RHD) Domain Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See Pfam:PF01833) that binds to DNA. PFAM PF00554
A PF00554 RHD Rel homology domain (RHD) Domain Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See Pfam:PF01833) that binds to DNA. PFAM PF00554

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
C,G 5'-D(*TP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*T)- 3' (1LE9:C,G)
  • none
  • none
  • none
D,H 5'-D(*AP*AP*GP*GP*AP*AP*AP*GP*TP*CP*CP*C)- 3' (1LE9:D,H)
  • none
  • none
  • none
A,E NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT (1LE9:A,E)
B,F NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT (1LE9:B,F)

Protein Modification Annotation

Type PDB Residue Nr. Description