Macromolecule Annotations for the Entities in PDB 1LDK

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
D PF01466 Skp1 Skp1 family, dimerisation domain Domain PFAM PF01466
E PF12937 F-box-like F-box-like Domain This is an F-box-like family. PFAM PF12937
C PF12678 zf-rbx1 RING-H2 zinc finger Family
A PF00888 Cullin Cullin family Family
D PF03931 Skp1_POZ Skp1 family, tetramerisation domain Domain PFAM PF03931
B PF10557 Cullin_Nedd8 Cullin protein neddylation domain Domain This is the neddylation site of cullin proteins which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae, and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue [1]. PFAM PF10557
B PF00888 Cullin Cullin family Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A CULLIN HOMOLOG (1LDK:A)
  • none
B CULLIN HOMOLOG (1LDK:B)
C ring-box protein 1 (1LDK:C)
  • none
  • none
D CYCLIN A/CDK2-ASSOCIATED PROTEIN P19 (1LDK:D)
  • none
  • none
E SKP2-like protein type gamma (1LDK:E)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description