3-Aminopyrrolidinone farnesyltransferase inhibitors: design of macrocyclic compounds with improved pharmacokinetics and excellent cell potency.

Bell, I.M; Gallicchio, S.N; Abrams, M; Beese, L.S; Beshore, D.C; Bhimnathwala, H; Bogusky, M.J; Buser, C.A; Culberson, J.C; Davide, J; Ellis-Hutchings, M; Fernandes, C; Gibbs, J.B; Graham, S.L; Hamilton, K.A; Hartman, G.D; Heimbrook, D.C; Homnick, C.F; Huber, H.E; Huff, J.R; Kassahun, K; Koblan, K.S; Kohl, N.E; Lobell, R.B; Lynch Jr; J.J; Robinson, R; Rodrigues, A.D; Taylor, J.S; Walsh, E.S; Williams, T.M; Zartman, C.B.

139555 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

1LD8

Co-crystal structure of Human Farnesyltransferase with farnesyldiphosphate and inhibitor compound 49

Macromolecule Annotations for the Entities in PDB 1LD8

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species
A	d1ld8a_	All alpha proteins	alpha-alpha superhelix	Protein prenylyltransferase	Protein prenylyltransferase	Protein farnesyltransferase alpha-subunit	Human (Homo sapiens) [TaxId: 9606]
B	d1ld8b_	All alpha proteins	alpha/alpha toroid	Terpenoid cyclases/Protein prenyltransferases	Protein prenyltransferases	Protein farnesyltransferase, beta-subunit	Human (Homo sapiens) [TaxId: 9606]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains	Domain	Class	Architecture	Topology	Homology
A	1ld8A00	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Protein prenylyltransferase
B	1ld8B00	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase

Protein Family Annotation Pfam Database Homepage

Chains	Pfam Accession	Pfam Identifier	Pfam Description	Type	Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	protein farnesyltransferase alpha subunit (1LD8:A)	Prenyltransferase Activity Protein Farnesyltransferase Activity Protein Geranylgeranyltransferase Activity Caax Protein Geranylgeranyltransferase Activity Rab Geranylgeranyltransferase Activity Protein Binding Microtubule Binding Protein Prenyltransferase Activity Transferase Activity Acetylcholine Receptor Regulator Activity Receptor Tyrosine Kinase Binding Alpha Tubulin Binding	Transforming Growth Factor Beta Receptor Signaling Pathway Neuromuscular Junction Development Protein Prenylation Protein Farnesylation Protein Geranylgeranylation Regulation of Rhodopsin Mediated Signaling Pathway Neurotransmitter Receptor Metabolic Process Skeletal Muscle Acetylcholine Gated Channel Clustering Positive Regulation of Tubulin Deacetylation Positive Regulation of Deacetylase Activity Execution Phase of Apoptosis Regulation of Neurotransmitter Receptor Activity	Cytoplasm Cytosol Microtubule Associated Complex Plasma Membrane Caax Protein Geranylgeranyltransferase Complex Protein Farnesyltransferase Complex
B	protein farnesyltransferase beta subunit (1LD8:B)	Catalytic Activity Farnesyltranstransferase Activity Prenyltransferase Activity Protein Farnesyltransferase Activity Protein Binding Drug Binding Zinc Ion Binding Transferase Activity Isoprenoid Binding Peptide Binding Metal Ion Binding	Positive Regulation of Cell Proliferation Negative Regulation of Cell Proliferation Response to Inorganic Substance Response to Organic Cyclic Compound Protein Farnesylation Regulation of Rhodopsin Mediated Signaling Pathway Response to Cytokine Wound Healing Positive Regulation of Cell Cycle Positive Regulation of Fibroblast Proliferation Positive Regulation of Nitric Oxide Synthase Biosynthetic Process	Cytosol Microtubule Associated Complex Protein Farnesyltransferase Complex Protein Containing Complex

Protein Modification Annotation

Type	PDB Residue Nr.	Description

The RCSB PDB is funded by a grant (DBI-1338415) from the National Science Foundation, the National Institutes of Health, and the US Department of Energy.

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139555 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

1LD8

Co-crystal structure of Human Farnesyltransferase with farnesyldiphosphate and inhibitor compound 49

Macromolecule Annotations for the Entities in PDB 1LD8

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Protein Family Annotation Pfam Database Homepage

Gene Product Annotation Gene Ontology Consortium Homepage

Protein Modification Annotation