Macromolecule Annotations for the Entities in PDB 1LD4

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1ld4a_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
B d1ld4b_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
C d1ld4c_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
D d1ld4d_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
E d1ld4e_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
F d1ld4f_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
G d1ld4g_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
H d1ld4h_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
I d1ld4i_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
J d1ld4j_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
K d1ld4k_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
L d1ld4l_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
M d1ld4m_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
N d1ld4n_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
O d1ld4o_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
P d1ld4p_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
M PF01589 Alpha_E1_glycop Alphavirus E1 glycoprotein Family
A PF00944 Peptidase_S3 Alphavirus core protein Domain Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. PFAM PF00944
E PF07716 bZIP_2 Basic region leucine zipper Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B,C,D Coat protein C (1LD4:A,B,C,D)
E,F,G,H,I,J,K,L GENERAL CONTROL PROTEIN GCN4 (1LD4:E,F,G,H,I,J,K,L)
  • none
M,N,O,P Spike glycoprotein E1 (1LD4:M,N,O,P)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description