Macromolecule Annotations for the Entities in PDB 1LD4

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1ld4a_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
B d1ld4b_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
C d1ld4c_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
D d1ld4d_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
E d1ld4e_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
F d1ld4f_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
G d1ld4g_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
H d1ld4h_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
I d1ld4i_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
J d1ld4j_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
K d1ld4k_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
L d1ld4l_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
M d1ld4m_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
N d1ld4n_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
O d1ld4o_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]
P d1ld4p_ Low resolution protein structures Viruses and virus-receptor complexes Viruses and virus-receptor complexes Viruses and virus-receptor complexes Structural proteins Sindbis virus [TaxId: 11034]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
M PF01589 Alpha_E1_glycop Alphavirus E1 glycoprotein Family
E PF07716 bZIP_2 Basic region leucine zipper Family
A PF00944 Peptidase_S3 Alphavirus core protein Domain Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. PFAM PF00944

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B,C,D Coat protein C (1LD4:A,B,C,D)
E,F,G,H,I,J,K,L GENERAL CONTROL PROTEIN GCN4 (1LD4:E,F,G,H,I,J,K,L)
  • none
M,N,O,P Spike glycoprotein E1 (1LD4:M,N,O,P)
  • none