Macromolecule Annotations for the Entities in PDB 1L9J

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
C d1l9jc_ All alpha proteins Cytochrome c Cytochrome c monodomain cytochrome c Cytochrome c2 Rhodobacter sphaeroides [TaxId: 1063]
D d1l9jd_ All alpha proteins Cytochrome c Cytochrome c monodomain cytochrome c Cytochrome c2 Rhodobacter sphaeroides [TaxId: 1063]
H36-253 d1l9jh1 All beta proteins PRC-barrel domain PRC-barrel domain Photosynthetic reaction centre, H-chain, cytoplasmic domain Photosynthetic reaction centre Rhodobacter sphaeroides [TaxId: 1063]
H8-35 d1l9jh2 Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction centre subunit H, transmembrane region Photosystem II reaction centre subunit H, transmembrane region Photosystem II reaction centre subunit H, transmembrane region Rhodobacter sphaeroides [TaxId: 1063]
L d1l9jl_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits L (light) subunit Rhodobacter sphaeroides [TaxId: 1063]
M d1l9jm_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits M (medium) subunit Rhodobacter sphaeroides [TaxId: 1063]
R d1l9jr_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits L (light) subunit Rhodobacter sphaeroides [TaxId: 1063]
S d1l9js_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits M (medium) subunit Rhodobacter sphaeroides [TaxId: 1063]
T36-253 d1l9jt1 All beta proteins PRC-barrel domain PRC-barrel domain Photosynthetic reaction centre, H-chain, cytoplasmic domain Photosynthetic reaction centre Rhodobacter sphaeroides [TaxId: 1063]
T8-35 d1l9jt2 Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction centre subunit H, transmembrane region Photosystem II reaction centre subunit H, transmembrane region Photosystem II reaction centre subunit H, transmembrane region Rhodobacter sphaeroides [TaxId: 1063]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
C 1l9jC00 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex; Chain D, domain 2 Cytochrome c
D 1l9jD00 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex; Chain D, domain 2 Cytochrome c
H1 1l9jH01 Few Secondary Structures Irregular Photosynthetic Reaction Center; Chain H, domain 1 Photosynthetic Reaction Center, subunit H, domain 1
H2 1l9jH02 Alpha Beta Alpha-Beta Complex Photosynthetic Reaction Center; Chain H, domain 2 Photosynthetic Reaction Center, subunit H, domain 2
L1 1l9jL01 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M; domain 1 Membrane spanning alpha-helix pairs
L2 1l9jL02 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M; domain 1 Membrane spanning alpha-helix pairs
M1 1l9jM01 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M; domain 1 Membrane spanning alpha-helix pairs
M2 1l9jM02 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M; domain 1 Membrane spanning alpha-helix pairs
R1 1l9jR01 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M; domain 1 Membrane spanning alpha-helix pairs
R2 1l9jR02 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M; domain 1 Membrane spanning alpha-helix pairs
S1 1l9jS01 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M; domain 1 Membrane spanning alpha-helix pairs
S2 1l9jS02 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M; domain 1 Membrane spanning alpha-helix pairs
T1 1l9jT01 Few Secondary Structures Irregular Photosynthetic Reaction Center; Chain H, domain 1 Photosynthetic Reaction Center, subunit H, domain 1
T2 1l9jT02 Alpha Beta Alpha-Beta Complex Photosynthetic Reaction Center; Chain H, domain 2 Photosynthetic Reaction Center, subunit H, domain 2

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
L,R REACTION CENTER PROTEIN L CHAIN (1L9J:L,R)
M,S REACTION CENTER PROTEIN M CHAIN (1L9J:M,S)
H,T REACTION CENTER PROTEIN H CHAIN (1L9J:H,T)
C,D cytochrome c-2 (1L9J:C,D)

Protein Modification Annotation

Type PDB Residue Nr. Description