Macromolecule Annotations for the Entities in PDB 1L3L

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A170-234 d1l3la1 All alpha proteins DNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators GerE-like (LuxR/UhpA family of transcriptional regulators) Quorum-sensing transcription factor TraR, C- terminal domain Agrobacterium tumefaciens [TaxId: 358]
A2-169 d1l3la2 Alpha and beta proteins (a+b) Profilin-like Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Transcription factor TraR, N-terminal domain Agrobacterium tumefaciens [TaxId: 358]
B170-234 d1l3lb1 All alpha proteins DNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators GerE-like (LuxR/UhpA family of transcriptional regulators) Quorum-sensing transcription factor TraR, C- terminal domain Agrobacterium tumefaciens [TaxId: 358]
B2-169 d1l3lb2 Alpha and beta proteins (a+b) Profilin-like Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Transcription factor TraR, N-terminal domain Agrobacterium tumefaciens [TaxId: 358]
C172-234 d1l3lc1 All alpha proteins DNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators GerE-like (LuxR/UhpA family of transcriptional regulators) Quorum-sensing transcription factor TraR, C- terminal domain Agrobacterium tumefaciens [TaxId: 358]
C1-162 d1l3lc2 Alpha and beta proteins (a+b) Profilin-like Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Transcription factor TraR, N-terminal domain Agrobacterium tumefaciens [TaxId: 358]
D172-234 d1l3ld1 All alpha proteins DNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators GerE-like (LuxR/UhpA family of transcriptional regulators) Quorum-sensing transcription factor TraR, C- terminal domain Agrobacterium tumefaciens [TaxId: 358]
D1-162 d1l3ld2 Alpha and beta proteins (a+b) Profilin-like Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Transcription factor TraR, N-terminal domain Agrobacterium tumefaciens [TaxId: 358]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF03472 Autoind_bind Autoinducer binding domain Domain This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules. PFAM PF03472
A PF00196 GerE Bacterial regulatory proteins, luxR family Domain PFAM PF00196

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
E,F,G,H 5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)- 3' (1L3L:E,F,G,H)
  • none
  • none
  • none
A,B,C,D Transcriptional activator protein traR (1L3L:A,B,C,D)

Protein Modification Annotation

Type PDB Residue Nr. Description