Macromolecule Annotations for the Entities in PDB 1KTD

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A82-182 d1ktda1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC alpha chain, C-terminal domain Mouse (Mus musculus), I-E group [TaxId: 10090]
A1-81 d1ktda2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain Mouse (Mus musculus), I-EK [TaxId: 10090]
B121-215 d1ktdb1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC beta chain, C-terminal domain Mouse (Mus musculus), I-E group [TaxId: 10090]
B1-120 d1ktdb2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain Mouse (Mus musculus), I-EK [TaxId: 10090]
C82-182 d1ktdc1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC alpha chain, C-terminal domain Mouse (Mus musculus), I-E group [TaxId: 10090]
C1-81 d1ktdc2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain Mouse (Mus musculus), I-EK [TaxId: 10090]
D121-215 d1ktdd1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC beta chain, C-terminal domain Mouse (Mus musculus), I-E group [TaxId: 10090]
D1-120 d1ktdd2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain Mouse (Mus musculus), I-EK [TaxId: 10090]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF00993 MHC_II_alpha Class II histocompatibility antigen, alpha domain Domain PFAM PF00993
B PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
B PF00969 MHC_II_beta Class II histocompatibility antigen, beta domain Domain PFAM PF00969
A PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,C H-2 class II histocompatibility antigen, E- D alpha chain (1KTD:A,C)
  • none
B,D Fusion protein consisting of cytochrome C peptide, glycine rich linker, and MHC E- beta-k (1KTD:B,D)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description