Macromolecule Annotations for the Entities in PDB 1KQS

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1kqs1_ All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e Archaeon Haloarcula marismortui [TaxId: 2238]
2 d1kqs2_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L44e Ribosomal protein L44e Archaeon Haloarcula marismortui [TaxId: 2238]
A91-237 d1kqsa1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
A1-90 d1kqsa2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
B d1kqsb_ All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 Archaeon Haloarcula marismortui [TaxId: 2238]
C d1kqsc_ Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Archaeon Haloarcula marismortui [TaxId: 2238]
D d1kqsd_ Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 Archaeon Haloarcula marismortui [TaxId: 2238]
E1-79 d1kqse1 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
E80-172 d1kqse2 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
F d1kqsf_ Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae Archaeon Haloarcula marismortui [TaxId: 2238]
G d1kqsg_ Peptides Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Archaeon Haloarcula marismortui [TaxId: 2238]
H d1kqsh_ Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e Archaeon Haloarcula marismortui [TaxId: 2238]
I d1kqsi_ Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Archaeon Haloarcula marismortui [TaxId: 2238]
J d1kqsj_ All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Archaeon Haloarcula marismortui [TaxId: 2238]
K d1kqsk_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) Archaeon Haloarcula marismortui [TaxId: 2238]
L d1kqsl_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L15e Ribosomal protein L15e Archaeon Haloarcula marismortui [TaxId: 2238]
M d1kqsm_ Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) Archaeon Haloarcula marismortui [TaxId: 2238]
N d1kqsn_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L18e Archaeon Haloarcula marismortui [TaxId: 2238]
O d1kqso_ All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Archaeon Haloarcula marismortui [TaxId: 2238]
P d1kqsp_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L21e Archaeon Haloarcula marismortui [TaxId: 2238]
Q d1kqsq_ Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Archaeon Haloarcula marismortui [TaxId: 2238]
R d1kqsr_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 Archaeon Haloarcula marismortui [TaxId: 2238]
S d1kqss_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) Archaeon Haloarcula marismortui [TaxId: 2238]
T d1kqst_ Small proteins Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) Ribosomal protein L24e Ribosomal protein L24e Archaeon Haloarcula marismortui [TaxId: 2238]
U d1kqsu_ All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Archaeon Haloarcula marismortui [TaxId: 2238]
V d1kqsv_ Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Archaeal L30 (L30a) Archaeon Haloarcula marismortui [TaxId: 2238]
W d1kqsw_ Alpha and beta proteins (a+b) Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Archaeon Haloarcula marismortui [TaxId: 2238]
X d1kqsx_ Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e Archaeon Haloarcula marismortui [TaxId: 2238]
Y d1kqsy_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae Archaeon Haloarcula marismortui [TaxId: 2238]
Z d1kqsz_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37e Ribosomal protein L37e Archaeon Haloarcula marismortui [TaxId: 2238]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
1 1kqs100 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain; Chain: I; Ribosomal protein L39e
2 1kqs200 Alpha Beta Roll Nuclear Transport Factor 2; Chain: A,
A1 1kqsA01 Mainly Beta Roll SH3 type barrels.
A2 1kqsA02 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
A3 1kqsA03 Few Secondary Structures Irregular Ribosomal protein L2; domain 3 Ribosomal protein L2, domain 3
B1 1kqsB01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3 Translation factors
B2 1kqsB02 Alpha Beta 2-Layer Sandwich Ribosomal Protein L3; Chain: B; domain 2,
B3 1kqsB03 Few Secondary Structures Irregular Ribosomal protein L3; domain 3 Ribosomal protein L3, domain 3
C 1kqsC00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L4; Chain: A;
D 1kqsD00 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A,
E1 1kqsE01 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
E2 1kqsE02 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
F 1kqsF00 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A;
G 1kqsG00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A
H 1kqsH00 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
I 1kqsI00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A;
J 1kqsJ00 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal Protein L14;
K1 1kqsK01 Few Secondary Structures Irregular Molecule: Ribosomal Protein L15; Chain: K; domain 1
K2 1kqsK02 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
L 1kqsL00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein l15e
M 1kqsM00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
N 1kqsN00 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
O1 1kqsO01 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1
O2 1kqsO02 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
O3 1kqsO03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces Single Heli x bin
P 1kqsP00 Mainly Beta Roll SH3 type barrels. Myosin S1 fragment SH3-like barrel
Q 1kqsQ00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal Protein L22; Chain A
R 1kqsR00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
S 1kqsS00 Mainly Beta Roll SH3 type barrels.
T 1kqsT00 Mainly Beta Roll Ribosomal Protein L24e; Chain: T;
U 1kqsU00 Mainly Alpha Orthogonal Bundle Helix Hairpins
V1 1kqsV01 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A,
V2 1kqsV02 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3
W 1kqsW00 Alpha Beta Roll Ribosomal Protein L31e; Chain: W;
Y 1kqsY00 Mainly Beta Single Sheet N-terminal domain of TfIIb
Z 1kqsZ00 Mainly Beta Single Sheet N-terminal domain of TfIIb

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
0 23S RRNA (1KQS:0)
  • none
  • none
  • none
9 5S RRNA (1KQS:9)
  • none
  • none
  • none
3 CCA (1KQS:3)
  • none
  • none
  • none
4 CC-Pmn-pcb (1KQS:4)
  • none
  • none
  • none
A RIBOSOMAL PROTEIN L2 (1KQS:A)
B RIBOSOMAL PROTEIN L3 (1KQS:B)
C RIBOSOMAL PROTEIN L4 (1KQS:C)
D RIBOSOMAL PROTEIN L5 (1KQS:D)
E RIBOSOMAL PROTEIN L6 (1KQS:E)
F RIBOSOMAL PROTEIN L7AE (1KQS:F)
G RIBOSOMAL PROTEIN L10 (1KQS:G)
H RIBOSOMAL PROTEIN L10E (1KQS:H)
I RIBOSOMAL PROTEIN L13 (1KQS:I)
J RIBOSOMAL PROTEIN L14 (1KQS:J)
K RIBOSOMAL PROTEIN L15 (1KQS:K)
L RIBOSOMAL PROTEIN L15E (1KQS:L)
M RIBOSOMAL PROTEIN L18 (1KQS:M)
N RIBOSOMAL PROTEIN L18E (1KQS:N)
O RIBOSOMAL PROTEIN L19E (1KQS:O)
P RIBOSOMAL PROTEIN L21E (1KQS:P)
Q RIBOSOMAL PROTEIN L22 (1KQS:Q)
R RIBOSOMAL PROTEIN L23 (1KQS:R)
S RIBOSOMAL PROTEIN L24 (1KQS:S)
T RIBOSOMAL PROTEIN L24E (1KQS:T)
U RIBOSOMAL PROTEIN L29 (1KQS:U)
V RIBOSOMAL PROTEIN L30 (1KQS:V)
W RIBOSOMAL PROTEIN L31E (1KQS:W)
X RIBOSOMAL PROTEIN L32E (1KQS:X)
Y RIBOSOMAL PROTEIN L37Ae (1KQS:Y)
Z RIBOSOMAL PROTEIN L37E (1KQS:Z)
1 RIBOSOMAL PROTEIN L39E (1KQS:1)
2 RIBOSOMAL PROTEIN L44E (1KQS:2)

Protein Modification Annotation

Type PDB Residue Nr. Description