Macromolecule Annotations for the Entities in PDB 1KQS

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1kqs1_ All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e Archaeon Haloarcula marismortui [TaxId: 2238]
2 d1kqs2_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L44e Ribosomal protein L44e Archaeon Haloarcula marismortui [TaxId: 2238]
A91-237 d1kqsa1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
A1-90 d1kqsa2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
B d1kqsb_ All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 Archaeon Haloarcula marismortui [TaxId: 2238]
C d1kqsc_ Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Archaeon Haloarcula marismortui [TaxId: 2238]
D d1kqsd_ Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 Archaeon Haloarcula marismortui [TaxId: 2238]
E1-79 d1kqse1 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
E80-172 d1kqse2 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
F d1kqsf_ Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae Archaeon Haloarcula marismortui [TaxId: 2238]
G d1kqsg_ Peptides Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Archaeon Haloarcula marismortui [TaxId: 2238]
H d1kqsh_ Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e Archaeon Haloarcula marismortui [TaxId: 2238]
I d1kqsi_ Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Archaeon Haloarcula marismortui [TaxId: 2238]
J d1kqsj_ All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Archaeon Haloarcula marismortui [TaxId: 2238]
K d1kqsk_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) Archaeon Haloarcula marismortui [TaxId: 2238]
L d1kqsl_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L15e Ribosomal protein L15e Archaeon Haloarcula marismortui [TaxId: 2238]
M d1kqsm_ Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) Archaeon Haloarcula marismortui [TaxId: 2238]
N d1kqsn_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L18e Archaeon Haloarcula marismortui [TaxId: 2238]
O d1kqso_ All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Archaeon Haloarcula marismortui [TaxId: 2238]
P d1kqsp_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L21e Archaeon Haloarcula marismortui [TaxId: 2238]
Q d1kqsq_ Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Archaeon Haloarcula marismortui [TaxId: 2238]
R d1kqsr_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 Archaeon Haloarcula marismortui [TaxId: 2238]
S d1kqss_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) Archaeon Haloarcula marismortui [TaxId: 2238]
T d1kqst_ Small proteins Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) Ribosomal protein L24e Ribosomal protein L24e Archaeon Haloarcula marismortui [TaxId: 2238]
U d1kqsu_ All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Archaeon Haloarcula marismortui [TaxId: 2238]
V d1kqsv_ Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Archaeal L30 (L30a) Archaeon Haloarcula marismortui [TaxId: 2238]
W d1kqsw_ Alpha and beta proteins (a+b) Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Archaeon Haloarcula marismortui [TaxId: 2238]
X d1kqsx_ Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e Archaeon Haloarcula marismortui [TaxId: 2238]
Y d1kqsy_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae Archaeon Haloarcula marismortui [TaxId: 2238]
Z d1kqsz_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37e Ribosomal protein L37e Archaeon Haloarcula marismortui [TaxId: 2238]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
1 1kqs100 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain; Chain: I; Ribosomal protein L39e
2 1kqs200 Alpha Beta Roll Nuclear Transport Factor 2; Chain: A,
A1 1kqsA01 Mainly Beta Roll SH3 type barrels.
A2 1kqsA02 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
A3 1kqsA03 Few Secondary Structures Irregular Ribosomal protein L2; domain 3 Ribosomal protein L2, domain 3
B1 1kqsB01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3 Translation factors
B2 1kqsB02 Alpha Beta 2-Layer Sandwich Ribosomal Protein L3; Chain: B; domain 2,
B3 1kqsB03 Few Secondary Structures Irregular Ribosomal protein L3; domain 3 Ribosomal protein L3, domain 3
C 1kqsC00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L4; Chain: A;
D 1kqsD00 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A,
E1 1kqsE01 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
E2 1kqsE02 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
F 1kqsF00 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A;
G 1kqsG00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A
H 1kqsH00 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
I 1kqsI00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A;
J 1kqsJ00 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal Protein L14;
K1 1kqsK01 Few Secondary Structures Irregular Molecule: Ribosomal Protein L15; Chain: K; domain 1
K2 1kqsK02 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
L 1kqsL00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein l15e
M 1kqsM00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
N 1kqsN00 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
O1 1kqsO01 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1
O2 1kqsO02 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
O3 1kqsO03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces Single Heli x bin
P 1kqsP00 Mainly Beta Roll SH3 type barrels. Myosin S1 fragment SH3-like barrel
Q 1kqsQ00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal Protein L22; Chain A
R 1kqsR00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
S 1kqsS00 Mainly Beta Roll SH3 type barrels.
T 1kqsT00 Mainly Beta Roll Ribosomal Protein L24e; Chain: T;
U 1kqsU00 Mainly Alpha Orthogonal Bundle Helix Hairpins
V1 1kqsV01 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A,
V2 1kqsV02 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3
W 1kqsW00 Alpha Beta Roll Ribosomal Protein L31e; Chain: W;
Y 1kqsY00 Mainly Beta Single Sheet N-terminal domain of TfIIb
Z 1kqsZ00 Mainly Beta Single Sheet N-terminal domain of TfIIb

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
S PF00467 KOW KOW motif Family
T PF01246 Ribosomal_L24e Ribosomal protein L24e Family
A PF00181 Ribosomal_L2 Ribosomal Proteins L2, RNA binding domain Domain PFAM PF00181
2 PF00935 Ribosomal_L44 Ribosomal protein L44 Family
I PF00572 Ribosomal_L13 Ribosomal protein L13 Family
Z PF01907 Ribosomal_L37e Ribosomal protein L37e Family
N PF00828 Ribosomal_L18e Ribosomal protein L18e/L15 Family
X PF01655 Ribosomal_L32e Ribosomal protein L32 Family
B PF00297 Ribosomal_L3 Ribosomal protein L3 Family
D PF00673 Ribosomal_L5_C ribosomal L5P family C-terminus Domain This region is found associated with Pfam:PF00281. PFAM PF00673
1 PF00832 Ribosomal_L39 Ribosomal L39 protein Family
M PF00861 Ribosomal_L18p Ribosomal L18p/L5e family Family
R PF00276 Ribosomal_L23 Ribosomal protein L23 Family
G PF00466 Ribosomal_L10 Ribosomal protein L10 Family
W PF01198 Ribosomal_L31e Ribosomal protein L31e Family
H PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e Family
Y PF01780 Ribosomal_L37ae Ribosomal L37ae protein family Family
J PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e Domain PFAM PF00238
V PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e Domain This family includes prokaryotic L30 and eukaryotic L7. PFAM PF00327
F PF01248 Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Domain This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. PFAM PF01248
U PF00831 Ribosomal_L29 Ribosomal L29 protein Family
K PF00828 Ribosomal_L18e Ribosomal protein L18e/L15 Family
O PF01280 Ribosomal_L19e Ribosomal protein L19e Family
C PF00573 Ribosomal_L4 Ribosomal protein L4/L1 family Family
E PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
P PF01157 Ribosomal_L21e Ribosomal protein L21e Family
Q PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e Domain This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. PFAM PF00237
L PF00827 Ribosomal_L15e Ribosomal L15 Family
A PF03947 Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain Domain PFAM PF03947
E PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
D PF00281 Ribosomal_L5 Ribosomal protein L5 Domain PFAM PF00281

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
0 23S RRNA (1KQS:0)
  • none
  • none
  • none
9 5S RRNA (1KQS:9)
  • none
  • none
  • none
3 CCA (1KQS:3)
  • none
  • none
  • none
4 CC-Pmn-pcb (1KQS:4)
  • none
  • none
  • none
A RIBOSOMAL PROTEIN L2 (1KQS:A)
B RIBOSOMAL PROTEIN L3 (1KQS:B)
C RIBOSOMAL PROTEIN L4 (1KQS:C)
D RIBOSOMAL PROTEIN L5 (1KQS:D)
E RIBOSOMAL PROTEIN L6 (1KQS:E)
F RIBOSOMAL PROTEIN L7AE (1KQS:F)
G RIBOSOMAL PROTEIN L10 (1KQS:G)
  • none
H RIBOSOMAL PROTEIN L10E (1KQS:H)
I RIBOSOMAL PROTEIN L13 (1KQS:I)
J RIBOSOMAL PROTEIN L14 (1KQS:J)
K RIBOSOMAL PROTEIN L15 (1KQS:K)
L RIBOSOMAL PROTEIN L15E (1KQS:L)
M RIBOSOMAL PROTEIN L18 (1KQS:M)
N RIBOSOMAL PROTEIN L18E (1KQS:N)
O RIBOSOMAL PROTEIN L19E (1KQS:O)
P RIBOSOMAL PROTEIN L21E (1KQS:P)
Q RIBOSOMAL PROTEIN L22 (1KQS:Q)
R RIBOSOMAL PROTEIN L23 (1KQS:R)
S RIBOSOMAL PROTEIN L24 (1KQS:S)
T RIBOSOMAL PROTEIN L24E (1KQS:T)
U RIBOSOMAL PROTEIN L29 (1KQS:U)
V RIBOSOMAL PROTEIN L30 (1KQS:V)
W RIBOSOMAL PROTEIN L31E (1KQS:W)
X RIBOSOMAL PROTEIN L32E (1KQS:X)
Y RIBOSOMAL PROTEIN L37Ae (1KQS:Y)
Z RIBOSOMAL PROTEIN L37E (1KQS:Z)
1 RIBOSOMAL PROTEIN L39E (1KQS:1)
  • none
2 RIBOSOMAL PROTEIN L44E (1KQS:2)

Protein Modification Annotation

Type PDB Residue Nr. Description