Macromolecule Annotations for the Entities in PDB 1KOG

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A533-642 d1koga1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Threonyl-tRNA synthetase (ThrRS), C-terminal domain Escherichia coli [TaxId: 562]
A242-532 d1koga2 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Threonyl-tRNA synthetase (ThrRS) Escherichia coli [TaxId: 562]
B533-642 d1kogb1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Threonyl-tRNA synthetase (ThrRS), C-terminal domain Escherichia coli [TaxId: 562]
B242-532 d1kogb2 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Threonyl-tRNA synthetase (ThrRS) Escherichia coli [TaxId: 562]
C533-642 d1kogc1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Threonyl-tRNA synthetase (ThrRS), C-terminal domain Escherichia coli [TaxId: 562]
C242-532 d1kogc2 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Threonyl-tRNA synthetase (ThrRS) Escherichia coli [TaxId: 562]
D533-642 d1kogd1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Threonyl-tRNA synthetase (ThrRS), C-terminal domain Escherichia coli [TaxId: 562]
D242-532 d1kogd2 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Threonyl-tRNA synthetase (ThrRS) Escherichia coli [TaxId: 562]
E533-642 d1koge1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Threonyl-tRNA synthetase (ThrRS), C-terminal domain Escherichia coli [TaxId: 562]
E242-532 d1koge2 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Threonyl-tRNA synthetase (ThrRS) Escherichia coli [TaxId: 562]
F533-642 d1kogf1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Threonyl-tRNA synthetase (ThrRS), C-terminal domain Escherichia coli [TaxId: 562]
F242-532 d1kogf2 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Threonyl-tRNA synthetase (ThrRS) Escherichia coli [TaxId: 562]
G533-642 d1kogg1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Threonyl-tRNA synthetase (ThrRS), C-terminal domain Escherichia coli [TaxId: 562]
G242-532 d1kogg2 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Threonyl-tRNA synthetase (ThrRS) Escherichia coli [TaxId: 562]
H533-642 d1kogh1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Threonyl-tRNA synthetase (ThrRS), C-terminal domain Escherichia coli [TaxId: 562]
H242-532 d1kogh2 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Threonyl-tRNA synthetase (ThrRS) Escherichia coli [TaxId: 562]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 1kogA01 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein; domain 2 Bira Bifunctional Protein; Domain 2
A2 1kogA02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class II aaRS ABD-related
B1 1kogB01 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein; domain 2 Bira Bifunctional Protein; Domain 2
B2 1kogB02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class II aaRS ABD-related
C1 1kogC01 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein; domain 2 Bira Bifunctional Protein; Domain 2
C2 1kogC02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class II aaRS ABD-related
D1 1kogD01 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein; domain 2 Bira Bifunctional Protein; Domain 2
D2 1kogD02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class II aaRS ABD-related
E1 1kogE01 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein; domain 2 Bira Bifunctional Protein; Domain 2
E2 1kogE02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class II aaRS ABD-related
F1 1kogF01 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein; domain 2 Bira Bifunctional Protein; Domain 2
F2 1kogF02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class II aaRS ABD-related
G1 1kogG01 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein; domain 2 Bira Bifunctional Protein; Domain 2
G2 1kogG02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class II aaRS ABD-related
H1 1kogH01 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein; domain 2 Bira Bifunctional Protein; Domain 2
H2 1kogH02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class II aaRS ABD-related

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) Domain Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. PFAM PF00587
A PF03129 HGTP_anticodon Anticodon binding domain Domain This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [1] it is probably the anticodon binding domain [2]. PFAM PF03129

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
I,J,K,L,M,N,O,P Threonyl-tRNA synthetase mRNA (1KOG:I,J,K,L,M,N,O,P)
  • none
  • none
  • none
A,B,C,D,E,F,G,H Threonyl-tRNA synthetase (1KOG:A,B,C,D,E,F,G,H)

Protein Modification Annotation

Type PDB Residue Nr. Description