Macromolecule Annotations for the Entities in PDB 1KOG

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A533-642 d1koga1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Threonyl-tRNA synthetase (ThrRS), C-terminal domain Escherichia coli [TaxId: 562]
A242-532 d1koga2 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Threonyl-tRNA synthetase (ThrRS) Escherichia coli [TaxId: 562]
B533-642 d1kogb1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Threonyl-tRNA synthetase (ThrRS), C-terminal domain Escherichia coli [TaxId: 562]
B242-532 d1kogb2 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Threonyl-tRNA synthetase (ThrRS) Escherichia coli [TaxId: 562]
C533-642 d1kogc1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Threonyl-tRNA synthetase (ThrRS), C-terminal domain Escherichia coli [TaxId: 562]
C242-532 d1kogc2 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Threonyl-tRNA synthetase (ThrRS) Escherichia coli [TaxId: 562]
D533-642 d1kogd1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Threonyl-tRNA synthetase (ThrRS), C-terminal domain Escherichia coli [TaxId: 562]
D242-532 d1kogd2 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Threonyl-tRNA synthetase (ThrRS) Escherichia coli [TaxId: 562]
E533-642 d1koge1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Threonyl-tRNA synthetase (ThrRS), C-terminal domain Escherichia coli [TaxId: 562]
E242-532 d1koge2 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Threonyl-tRNA synthetase (ThrRS) Escherichia coli [TaxId: 562]
F533-642 d1kogf1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Threonyl-tRNA synthetase (ThrRS), C-terminal domain Escherichia coli [TaxId: 562]
F242-532 d1kogf2 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Threonyl-tRNA synthetase (ThrRS) Escherichia coli [TaxId: 562]
G533-642 d1kogg1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Threonyl-tRNA synthetase (ThrRS), C-terminal domain Escherichia coli [TaxId: 562]
G242-532 d1kogg2 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Threonyl-tRNA synthetase (ThrRS) Escherichia coli [TaxId: 562]
H533-642 d1kogh1 Alpha and beta proteins (a/b) Anticodon-binding domain-like Class II aaRS ABD-related Anticodon-binding domain of Class II aaRS Threonyl-tRNA synthetase (ThrRS), C-terminal domain Escherichia coli [TaxId: 562]
H242-532 d1kogh2 Alpha and beta proteins (a+b) Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)- like, catalytic domain Threonyl-tRNA synthetase (ThrRS) Escherichia coli [TaxId: 562]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 1kogA01 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein; domain 2 Bira Bifunctional Protein; Domain 2
A2 1kogA02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class II aaRS ABD-related
B1 1kogB01 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein; domain 2 Bira Bifunctional Protein; Domain 2
B2 1kogB02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class II aaRS ABD-related
C1 1kogC01 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein; domain 2 Bira Bifunctional Protein; Domain 2
C2 1kogC02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class II aaRS ABD-related
D1 1kogD01 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein; domain 2 Bira Bifunctional Protein; Domain 2
D2 1kogD02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class II aaRS ABD-related
E1 1kogE01 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein; domain 2 Bira Bifunctional Protein; Domain 2
E2 1kogE02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class II aaRS ABD-related
F1 1kogF01 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein; domain 2 Bira Bifunctional Protein; Domain 2
F2 1kogF02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class II aaRS ABD-related
G1 1kogG01 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein; domain 2 Bira Bifunctional Protein; Domain 2
G2 1kogG02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class II aaRS ABD-related
H1 1kogH01 Alpha Beta 2-Layer Sandwich BirA Bifunctional Protein; domain 2 Bira Bifunctional Protein; Domain 2
H2 1kogH02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Class II aaRS ABD-related

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF03129 HGTP_anticodon Anticodon binding domain Domain This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [1] it is probably the anticodon binding domain [2]. PFAM PF03129
A PF00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) Domain Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. PFAM PF00587

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
I,J,K,L,M,N,O,P Threonyl-tRNA synthetase mRNA (1KOG:I,J,K,L,M,N,O,P)
  • none
  • none
  • none
A,B,C,D,E,F,G,H Threonyl-tRNA synthetase (1KOG:A,B,C,D,E,F,G,H)

Protein Modification Annotation

Type PDB Residue Nr. Description