Macromolecule Annotations for the Entities in PDB 1KJ2

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1kj2a_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Mouse (Mus musculus), alpha-chain [TaxId: 10090]
B d1kj2b_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Mouse (Mus musculus), beta-chain [TaxId: 10090]
D d1kj2d_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Mouse (Mus musculus), alpha-chain [TaxId: 10090]
E d1kj2e_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Mouse (Mus musculus), beta-chain [TaxId: 10090]
H182-276 d1kj2h1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class I MHC, alpha-3 domain Mouse (Mus musculus) [TaxId: 10090]
H1-181 d1kj2h2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class I MHC, alpha-1 and alpha-2 domains Mouse (Mus musculus), H-2KB [TaxId: 10090]
I182-277 d1kj2i1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class I MHC, alpha-3 domain Mouse (Mus musculus) [TaxId: 10090]
I1-181 d1kj2i2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class I MHC, alpha-1 and alpha-2 domains Mouse (Mus musculus), H-2KB [TaxId: 10090]
L d1kj2l_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) beta2-microglobulin Mouse (Mus musculus) [TaxId: 10090]
M d1kj2m_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) beta2-microglobulin Mouse (Mus musculus) [TaxId: 10090]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
L PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
B PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
A PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
H PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
H PF00129 MHC_I Class I Histocompatibility antigen, domains alpha 1 and 2 Domain PFAM PF00129

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
H,I Allogeneic H-2Kb MHC Class I Molecule (1KJ2:H,I)
  • none
  • none
  • none
P,Q Naturally processed octapeptide PKB1 (1KJ2:P,Q)
  • none
  • none
  • none
L,M Beta-2 microglobulin (1KJ2:L,M)
A,D KB5-C20 T-Cell receptor alpha-chain (1KJ2:A,D)
  • none
  • none
  • none
B,E KB5-C20 T-Cell receptor beta-chain (1KJ2:B,E)
  • none
  • none
  • none
SUGAR (8-MER) (1KJ2:)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description