Macromolecule Annotations for the Entities in PDB 1KJ2

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1kj2a_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Mouse (Mus musculus), alpha-chain [TaxId: 10090]
B d1kj2b_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Mouse (Mus musculus), beta-chain [TaxId: 10090]
D d1kj2d_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Mouse (Mus musculus), alpha-chain [TaxId: 10090]
E d1kj2e_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Mouse (Mus musculus), beta-chain [TaxId: 10090]
H182-276 d1kj2h1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class I MHC, alpha-3 domain Mouse (Mus musculus) [TaxId: 10090]
H1-181 d1kj2h2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class I MHC, alpha-1 and alpha-2 domains Mouse (Mus musculus), H-2KB [TaxId: 10090]
I182-277 d1kj2i1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class I MHC, alpha-3 domain Mouse (Mus musculus) [TaxId: 10090]
I1-181 d1kj2i2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class I MHC, alpha-1 and alpha-2 domains Mouse (Mus musculus), H-2KB [TaxId: 10090]
L d1kj2l_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) beta2-microglobulin Mouse (Mus musculus) [TaxId: 10090]
M d1kj2m_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) beta2-microglobulin Mouse (Mus musculus) [TaxId: 10090]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
H PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
L PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
H PF00129 MHC_I Class I Histocompatibility antigen, domains alpha 1 and 2 Domain PFAM PF00129
A PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
B PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
H,I Allogeneic H-2Kb MHC Class I Molecule (1KJ2:H,I)
  • none
  • none
  • none
P,Q Naturally processed octapeptide PKB1 (1KJ2:P,Q)
  • none
  • none
  • none
L,M Beta-2 microglobulin (1KJ2:L,M)
A,D KB5-C20 T-Cell receptor alpha-chain (1KJ2:A,D)
  • none
  • none
  • none
B,E KB5-C20 T-Cell receptor beta-chain (1KJ2:B,E)
  • none
  • none
  • none
SUGAR (8-MER) (1KJ2:)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description