Macromolecule Annotations for the Entities in PDB 1K9M

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1k9m1_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae Archaeon Haloarcula marismortui [TaxId: 2238]
2 d1k9m2_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37e Ribosomal protein L37e Archaeon Haloarcula marismortui [TaxId: 2238]
3 d1k9m3_ All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e Archaeon Haloarcula marismortui [TaxId: 2238]
4 d1k9m4_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L44e Ribosomal protein L44e Archaeon Haloarcula marismortui [TaxId: 2238]
C91-237 d1k9mc1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
C1-90 d1k9mc2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
D d1k9md_ All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 Archaeon Haloarcula marismortui [TaxId: 2238]
E d1k9me_ Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Archaeon Haloarcula marismortui [TaxId: 2238]
F d1k9mf_ Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 Archaeon Haloarcula marismortui [TaxId: 2238]
G1-79 d1k9mg1 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
G80-172 d1k9mg2 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
H d1k9mh_ Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae Archaeon Haloarcula marismortui [TaxId: 2238]
I d1k9mi_ Peptides Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Archaeon Haloarcula marismortui [TaxId: 2238]
J d1k9mj_ Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e Archaeon Haloarcula marismortui [TaxId: 2238]
K d1k9mk_ Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Archaeon Haloarcula marismortui [TaxId: 2238]
L d1k9ml_ All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Archaeon Haloarcula marismortui [TaxId: 2238]
M d1k9mm_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) Archaeon Haloarcula marismortui [TaxId: 2238]
N d1k9mn_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L15e Ribosomal protein L15e Archaeon Haloarcula marismortui [TaxId: 2238]
O d1k9mo_ Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) Archaeon Haloarcula marismortui [TaxId: 2238]
P d1k9mp_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L18e Archaeon Haloarcula marismortui [TaxId: 2238]
Q d1k9mq_ All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Archaeon Haloarcula marismortui [TaxId: 2238]
R d1k9mr_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L21e Archaeon Haloarcula marismortui [TaxId: 2238]
S d1k9ms_ Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Archaeon Haloarcula marismortui [TaxId: 2238]
T d1k9mt_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 Archaeon Haloarcula marismortui [TaxId: 2238]
U d1k9mu_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) Archaeon Haloarcula marismortui [TaxId: 2238]
V d1k9mv_ Small proteins Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) Ribosomal protein L24e Ribosomal protein L24e Archaeon Haloarcula marismortui [TaxId: 2238]
W d1k9mw_ All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Archaeon Haloarcula marismortui [TaxId: 2238]
X d1k9mx_ Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Archaeal L30 (L30a) Archaeon Haloarcula marismortui [TaxId: 2238]
Y d1k9my_ Alpha and beta proteins (a+b) Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Archaeon Haloarcula marismortui [TaxId: 2238]
Z d1k9mz_ Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e Archaeon Haloarcula marismortui [TaxId: 2238]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
1 1k9m100 Mainly Beta Single Sheet N-terminal domain of TfIIb
2 1k9m200 Mainly Beta Single Sheet N-terminal domain of TfIIb
3 1k9m300 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain; Chain: I; Ribosomal protein L39e
4 1k9m400 Alpha Beta Roll Nuclear Transport Factor 2; Chain: A,
C1 1k9mC01 Mainly Beta Roll SH3 type barrels.
C2 1k9mC02 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
C3 1k9mC03 Few Secondary Structures Irregular Ribosomal protein L2; domain 3 Ribosomal protein L2, domain 3
D1 1k9mD01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3 Translation factors
D2 1k9mD02 Alpha Beta 2-Layer Sandwich Ribosomal Protein L3; Chain: B; domain 2,
D3 1k9mD03 Few Secondary Structures Irregular Ribosomal protein L3; domain 3 Ribosomal protein L3, domain 3
E 1k9mE00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L4; Chain: A;
F 1k9mF00 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A,
G1 1k9mG01 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
G2 1k9mG02 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
H 1k9mH00 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A;
I 1k9mI00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A
J 1k9mJ00 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
K 1k9mK00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A;
L 1k9mL00 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal Protein L14;
M1 1k9mM01 Few Secondary Structures Irregular Molecule: Ribosomal Protein L15; Chain: K; domain 1
M2 1k9mM02 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
N 1k9mN00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein l15e
O 1k9mO00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
P 1k9mP00 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
Q1 1k9mQ01 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1
Q2 1k9mQ02 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
Q3 1k9mQ03 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces Single Heli x bin
R 1k9mR00 Mainly Beta Roll SH3 type barrels. Myosin S1 fragment SH3-like barrel
S 1k9mS00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal Protein L22; Chain A
T 1k9mT00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
U 1k9mU00 Mainly Beta Roll SH3 type barrels.
V 1k9mV00 Mainly Beta Roll Ribosomal Protein L24e; Chain: T;
W 1k9mW00 Mainly Alpha Orthogonal Bundle Helix Hairpins
X1 1k9mX01 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A,
X2 1k9mX02 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3
Y 1k9mY00 Alpha Beta Roll Ribosomal Protein L31e; Chain: W;

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
S PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e Domain This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. PFAM PF00237
N PF00827 Ribosomal_L15e Ribosomal L15 Family
P PF00828 Ribosomal_L18e Ribosomal protein L18e/L15 Family
U PF00467 KOW KOW motif Family
J PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e Family
G PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
3 PF00832 Ribosomal_L39 Ribosomal L39 protein Family
R PF01157 Ribosomal_L21e Ribosomal protein L21e Family
G PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
2 PF01907 Ribosomal_L37e Ribosomal protein L37e Family
W PF00831 Ribosomal_L29 Ribosomal L29 protein Family
H PF01248 Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Domain This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. PFAM PF01248
K PF00572 Ribosomal_L13 Ribosomal protein L13 Family
Y PF01198 Ribosomal_L31e Ribosomal protein L31e Family
M PF00828 Ribosomal_L18e Ribosomal protein L18e/L15 Family
O PF00861 Ribosomal_L18p Ribosomal L18p/L5e family Family
F PF00673 Ribosomal_L5_C ribosomal L5P family C-terminus Domain This region is found associated with Pfam:PF00281. PFAM PF00673
E PF00573 Ribosomal_L4 Ribosomal protein L4/L1 family Family
C PF03947 Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain Domain PFAM PF03947
I PF00466 Ribosomal_L10 Ribosomal protein L10 Family
C PF00181 Ribosomal_L2 Ribosomal Proteins L2, RNA binding domain Domain PFAM PF00181
V PF01246 Ribosomal_L24e Ribosomal protein L24e Family
L PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e Domain PFAM PF00238
D PF00297 Ribosomal_L3 Ribosomal protein L3 Family
X PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e Domain This family includes prokaryotic L30 and eukaryotic L7. PFAM PF00327
1 PF01780 Ribosomal_L37ae Ribosomal L37ae protein family Family
Z PF01655 Ribosomal_L32e Ribosomal protein L32 Family
T PF00276 Ribosomal_L23 Ribosomal protein L23 Family
F PF00281 Ribosomal_L5 Ribosomal protein L5 Domain PFAM PF00281
4 PF00935 Ribosomal_L44 Ribosomal protein L44 Family
Q PF01280 Ribosomal_L19e Ribosomal protein L19e Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 23S RRNA (1K9M:A)
  • none
  • none
  • none
B 5S RRNA (1K9M:B)
  • none
  • none
  • none
C RIBOSOMAL PROTEIN L2 (1K9M:C)
D RIBOSOMAL PROTEIN L3 (1K9M:D)
E RIBOSOMAL PROTEIN L4 (1K9M:E)
F RIBOSOMAL PROTEIN L5 (1K9M:F)
G RIBOSOMAL PROTEIN L6 (1K9M:G)
H RIBOSOMAL PROTEIN L7AE (1K9M:H)
I RIBOSOMAL PROTEIN L10 (1K9M:I)
J RIBOSOMAL PROTEIN L10E (1K9M:J)
K RIBOSOMAL PROTEIN L13 (1K9M:K)
L RIBOSOMAL PROTEIN L14 (1K9M:L)
M RIBOSOMAL PROTEIN L15 (1K9M:M)
N RIBOSOMAL PROTEIN L15E (1K9M:N)
O RIBOSOMAL PROTEIN L18 (1K9M:O)
P RIBOSOMAL PROTEIN L18E (1K9M:P)
Q RIBOSOMAL PROTEIN L19E (1K9M:Q)
R RIBOSOMAL PROTEIN L21E (1K9M:R)
S RIBOSOMAL PROTEIN L22 (1K9M:S)
T RIBOSOMAL PROTEIN L23 (1K9M:T)
U RIBOSOMAL PROTEIN L24 (1K9M:U)
V RIBOSOMAL PROTEIN L24E (1K9M:V)
W RIBOSOMAL PROTEIN L29 (1K9M:W)
X RIBOSOMAL PROTEIN L30 (1K9M:X)
Y RIBOSOMAL PROTEIN L31E (1K9M:Y)
Z RIBOSOMAL PROTEIN L32E (1K9M:Z)
1 RIBOSOMAL PROTEIN L37Ae (1K9M:1)
2 RIBOSOMAL PROTEIN L37E (1K9M:2)
3 RIBOSOMAL PROTEIN L39E (1K9M:3)
4 RIBOSOMAL PROTEIN L44E (1K9M:4)

Protein Modification Annotation

Type PDB Residue Nr. Description