Macromolecule Annotations for the Entities in PDB 1K5M

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF00073 Rhv picornavirus capsid protein Domain CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur. PFAM PF00073
D PF02226 Pico_P1A Picornavirus coat protein (VP4) Family
A PF00073 Rhv picornavirus capsid protein Domain CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur. PFAM PF00073
C PF00073 Rhv picornavirus capsid protein Domain CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur. PFAM PF00073

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A COAT PROTEIN VP1 (P1D) (1K5M:A)
  • none
B CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV- 1 gp120 (1K5M:B)
  • none
C COAT PROTEIN VP3 (P1C) (1K5M:C)
  • none
D COAT PROTEIN VP4 (P1A) (1K5M:D)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description