Macromolecule Annotations for the Entities in PDB 1JRP

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A85-166 d1jrpa1 All alpha proteins CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like Xanthine dehydrogenase chain A, domain 2 Rhodobacter capsulatus [TaxId: 1061]
A1-84 d1jrpa2 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) 2Fe-2S ferredoxin-like 2Fe-2S ferredoxin domains from multidomain proteins Xanthine dehydrogenase chain A, N-terminal domain Rhodobacter capsulatus [TaxId: 1061]
A346-462 d1jrpa3 Alpha and beta proteins (a+b) CO dehydrogenase flavoprotein C-domain-like CO dehydrogenase flavoprotein C-terminal domain- like CO dehydrogenase flavoprotein C-terminal domain- like Xanthine dehydrogenase chain A, domain 4 Rhodobacter capsulatus [TaxId: 1061]
A179-345 d1jrpa4 Alpha and beta proteins (a+b) FAD-binding/transporter-associated domain- like FAD-binding/transporter-associated domain- like CO dehydrogenase flavoprotein N-terminal domain- like Xanthine dehydrogenase chain A, domain 3 Rhodobacter capsulatus [TaxId: 1061]
B2-123 d1jrpb1 Alpha and beta proteins (a+b) alpha/beta-Hammerhead CO dehydrogenase molybdoprotein N-domain- like CO dehydrogenase molybdoprotein N-domain- like Xanthine dehydrogenase chain B, N-terminal domain Rhodobacter capsulatus [TaxId: 1061]
B124-777 d1jrpb2 Alpha and beta proteins (a+b) Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain Xanthine dehydrogenase chain B, C-terminal domain Rhodobacter capsulatus [TaxId: 1061]
C85-166 d1jrpc1 All alpha proteins CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like Xanthine dehydrogenase chain A, domain 2 Rhodobacter capsulatus [TaxId: 1061]
C1-84 d1jrpc2 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) 2Fe-2S ferredoxin-like 2Fe-2S ferredoxin domains from multidomain proteins Xanthine dehydrogenase chain A, N-terminal domain Rhodobacter capsulatus [TaxId: 1061]
C346-462 d1jrpc3 Alpha and beta proteins (a+b) CO dehydrogenase flavoprotein C-domain-like CO dehydrogenase flavoprotein C-terminal domain- like CO dehydrogenase flavoprotein C-terminal domain- like Xanthine dehydrogenase chain A, domain 4 Rhodobacter capsulatus [TaxId: 1061]
C179-345 d1jrpc4 Alpha and beta proteins (a+b) FAD-binding/transporter-associated domain- like FAD-binding/transporter-associated domain- like CO dehydrogenase flavoprotein N-terminal domain- like Xanthine dehydrogenase chain A, domain 3 Rhodobacter capsulatus [TaxId: 1061]
D2-123 d1jrpd1 Alpha and beta proteins (a+b) alpha/beta-Hammerhead CO dehydrogenase molybdoprotein N-domain- like CO dehydrogenase molybdoprotein N-domain- like Xanthine dehydrogenase chain B, N-terminal domain Rhodobacter capsulatus [TaxId: 1061]
D124-777 d1jrpd2 Alpha and beta proteins (a+b) Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain Xanthine dehydrogenase chain B, C-terminal domain Rhodobacter capsulatus [TaxId: 1061]
E85-166 d1jrpe1 All alpha proteins CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like Xanthine dehydrogenase chain A, domain 2 Rhodobacter capsulatus [TaxId: 1061]
E1-84 d1jrpe2 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) 2Fe-2S ferredoxin-like 2Fe-2S ferredoxin domains from multidomain proteins Xanthine dehydrogenase chain A, N-terminal domain Rhodobacter capsulatus [TaxId: 1061]
E346-462 d1jrpe3 Alpha and beta proteins (a+b) CO dehydrogenase flavoprotein C-domain-like CO dehydrogenase flavoprotein C-terminal domain- like CO dehydrogenase flavoprotein C-terminal domain- like Xanthine dehydrogenase chain A, domain 4 Rhodobacter capsulatus [TaxId: 1061]
E179-345 d1jrpe4 Alpha and beta proteins (a+b) FAD-binding/transporter-associated domain- like FAD-binding/transporter-associated domain- like CO dehydrogenase flavoprotein N-terminal domain- like Xanthine dehydrogenase chain A, domain 3 Rhodobacter capsulatus [TaxId: 1061]
F2-123 d1jrpf1 Alpha and beta proteins (a+b) alpha/beta-Hammerhead CO dehydrogenase molybdoprotein N-domain- like CO dehydrogenase molybdoprotein N-domain- like Xanthine dehydrogenase chain B, N-terminal domain Rhodobacter capsulatus [TaxId: 1061]
F124-777 d1jrpf2 Alpha and beta proteins (a+b) Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain Xanthine dehydrogenase chain B, C-terminal domain Rhodobacter capsulatus [TaxId: 1061]
G85-166 d1jrpg1 All alpha proteins CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like Xanthine dehydrogenase chain A, domain 2 Rhodobacter capsulatus [TaxId: 1061]
G1-84 d1jrpg2 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) 2Fe-2S ferredoxin-like 2Fe-2S ferredoxin domains from multidomain proteins Xanthine dehydrogenase chain A, N-terminal domain Rhodobacter capsulatus [TaxId: 1061]
G346-462 d1jrpg3 Alpha and beta proteins (a+b) CO dehydrogenase flavoprotein C-domain-like CO dehydrogenase flavoprotein C-terminal domain- like CO dehydrogenase flavoprotein C-terminal domain- like Xanthine dehydrogenase chain A, domain 4 Rhodobacter capsulatus [TaxId: 1061]
G179-345 d1jrpg4 Alpha and beta proteins (a+b) FAD-binding/transporter-associated domain- like FAD-binding/transporter-associated domain- like CO dehydrogenase flavoprotein N-terminal domain- like Xanthine dehydrogenase chain A, domain 3 Rhodobacter capsulatus [TaxId: 1061]
H2-123 d1jrph1 Alpha and beta proteins (a+b) alpha/beta-Hammerhead CO dehydrogenase molybdoprotein N-domain- like CO dehydrogenase molybdoprotein N-domain- like Xanthine dehydrogenase chain B, N-terminal domain Rhodobacter capsulatus [TaxId: 1061]
H124-777 d1jrph2 Alpha and beta proteins (a+b) Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain Xanthine dehydrogenase chain B, C-terminal domain Rhodobacter capsulatus [TaxId: 1061]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 1jrpA01 Alpha Beta Roll Ubiquitin-like (UB roll)
A2 1jrpA02 Mainly Alpha Orthogonal Bundle DNA polymerase; domain 1
A4 1jrpA04 Alpha Beta 2-Layer Sandwich Enolase-like; domain 1
B1 1jrpB01 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
B2 1jrpB02 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde Oxidoreductase; domain 4
B3 1jrpB03 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde Oxidoreductase; domain 4
B4 1jrpB04 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde Oxidoreductase; domain 4
B5 1jrpB05 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde Oxidoreductase; domain 4
C1 1jrpC01 Alpha Beta Roll Ubiquitin-like (UB roll)
C2 1jrpC02 Mainly Alpha Orthogonal Bundle DNA polymerase; domain 1
C3 1jrpC03 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2
C4 1jrpC04 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3
C5 1jrpC05 Alpha Beta 2-Layer Sandwich Enolase-like; domain 1
D1 1jrpD01 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
D2 1jrpD02 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde Oxidoreductase; domain 4
D3 1jrpD03 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde Oxidoreductase; domain 4
D4 1jrpD04 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde Oxidoreductase; domain 4
D5 1jrpD05 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde Oxidoreductase; domain 4
E1 1jrpE01 Alpha Beta Roll Ubiquitin-like (UB roll)
E2 1jrpE02 Mainly Alpha Orthogonal Bundle DNA polymerase; domain 1
E3 1jrpE03 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2
E4 1jrpE04 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3
E5 1jrpE05 Alpha Beta 2-Layer Sandwich Enolase-like; domain 1
F1 1jrpF01 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
F2 1jrpF02 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde Oxidoreductase; domain 4
F3 1jrpF03 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde Oxidoreductase; domain 4
F4 1jrpF04 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde Oxidoreductase; domain 4
F5 1jrpF05 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde Oxidoreductase; domain 4
G1 1jrpG01 Alpha Beta Roll Ubiquitin-like (UB roll)
G2 1jrpG02 Mainly Alpha Orthogonal Bundle DNA polymerase; domain 1
G3 1jrpG03 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2
G4 1jrpG04 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3
G5 1jrpG05 Alpha Beta 2-Layer Sandwich Enolase-like; domain 1
H1 1jrpH01 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
H2 1jrpH02 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde Oxidoreductase; domain 4
H3 1jrpH03 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde Oxidoreductase; domain 4
H4 1jrpH04 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde Oxidoreductase; domain 4
H5 1jrpH05 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde Oxidoreductase; domain 4

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase Domain PFAM PF02738
A PF00111 Fer2 2Fe-2S iron-sulfur cluster binding domain Domain PFAM PF00111
A PF01799 Fer2_2 [2Fe-2S] binding domain Domain PFAM PF01799
B PF01315 Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Domain PFAM PF01315
A PF03450 CO_deh_flav_C CO dehydrogenase flavoprotein C-terminal domain Domain PFAM PF03450
A PF00941 FAD_binding_5 FAD binding domain in molybdopterin dehydrogenase Family

Protein Modification Annotation

Type PDB Residue Nr. Description