Macromolecule Annotations for the Entities in PDB 1JNY

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A228-322 d1jnya1 All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Elongation factors Elongation factor eEF-1alpha, domain 2 Archaeon Sulfolobus solfataricus [TaxId: 2287]
A323-429 d1jnya2 All beta proteins Elongation factor/aminomethyltransferase common domain EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Elongation factor eEF-1alpha, C-terminal domain Archaeon Sulfolobus solfataricus [TaxId: 2287]
A4-227 d1jnya3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases G proteins Elongation factor eEF-1alpha, N-terminal (G) domain Archaeon Sulfolobus solfataricus [TaxId: 2287]
B228-322 d1jnyb1 All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Elongation factors Elongation factor eEF-1alpha, domain 2 Archaeon Sulfolobus solfataricus [TaxId: 2287]
B323-430 d1jnyb2 All beta proteins Elongation factor/aminomethyltransferase common domain EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Elongation factor eEF-1alpha, C-terminal domain Archaeon Sulfolobus solfataricus [TaxId: 2287]
B4-227 d1jnyb3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases G proteins Elongation factor eEF-1alpha, N-terminal (G) domain Archaeon Sulfolobus solfataricus [TaxId: 2287]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF03143 GTP_EFTU_D3 Elongation factor Tu C-terminal domain Domain Elongation factor Tu consists of three structural domains, this is the third domain. This domain adopts a beta barrel structure. This the third domain is involved in binding to both charged tRNA [1] and binding to EF-Ts Pfam:PF00889 [2]. PFAM PF03143
A PF03144 GTP_EFTU_D2 Elongation factor Tu domain 2 Domain Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain. PFAM PF03144
A PF00009 GTP_EFTU Elongation factor Tu GTP binding domain Domain This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. PFAM PF00009

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B Elongation factor 1-alpha (1JNY:A,B)

Protein Modification Annotation

Type PDB Residue Nr. Description