Macromolecule Annotations for the Entities in PDB 1JNB

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1jnba_ Multi-domain proteins (alpha and beta) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Bacteriophage phi-29 [TaxId: 10756]
B d1jnbb_ Multi-domain proteins (alpha and beta) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Bacteriophage phi-29 [TaxId: 10756]
C d1jnbc_ Multi-domain proteins (alpha and beta) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Bacteriophage phi-29 [TaxId: 10756]
D d1jnbd_ Multi-domain proteins (alpha and beta) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Bacteriophage phi-29 [TaxId: 10756]
E d1jnbe_ Multi-domain proteins (alpha and beta) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Bacteriophage phi-29 [TaxId: 10756]
F d1jnbf_ Multi-domain proteins (alpha and beta) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Bacteriophage phi-29 [TaxId: 10756]
G d1jnbg_ Multi-domain proteins (alpha and beta) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Bacteriophage phi-29 [TaxId: 10756]
H d1jnbh_ Multi-domain proteins (alpha and beta) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Bacteriophage phi-29 [TaxId: 10756]
I d1jnbi_ Multi-domain proteins (alpha and beta) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Bacteriophage phi-29 [TaxId: 10756]
J d1jnbj_ Multi-domain proteins (alpha and beta) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Bacteriophage phi-29 [TaxId: 10756]
K d1jnbk_ Multi-domain proteins (alpha and beta) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Bacteriophage phi-29 [TaxId: 10756]
L d1jnbl_ Multi-domain proteins (alpha and beta) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Bacteriophage phi-29 [TaxId: 10756]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 1jnbA01 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1
A2 1jnbA02 Mainly Beta Beta Barrel Upper collar protein gp10 (connector protein) fold Upper collar protein gp10 (connector protein)
A3 1jnbA03 Alpha Beta 2-Layer Sandwich Crambin Bacteriophage PHI-29 conector. Domain 3
B1 1jnbB01 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1
B2 1jnbB02 Mainly Beta Beta Barrel Upper collar protein gp10 (connector protein) fold Upper collar protein gp10 (connector protein)
B3 1jnbB03 Alpha Beta 2-Layer Sandwich Crambin Bacteriophage PHI-29 conector. Domain 3
C1 1jnbC01 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1
C2 1jnbC02 Mainly Beta Beta Barrel Upper collar protein gp10 (connector protein) fold Upper collar protein gp10 (connector protein)
C3 1jnbC03 Alpha Beta 2-Layer Sandwich Crambin Bacteriophage PHI-29 conector. Domain 3
D1 1jnbD01 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1
D2 1jnbD02 Mainly Beta Beta Barrel Upper collar protein gp10 (connector protein) fold Upper collar protein gp10 (connector protein)
D3 1jnbD03 Alpha Beta 2-Layer Sandwich Crambin Bacteriophage PHI-29 conector. Domain 3
E1 1jnbE01 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1
E2 1jnbE02 Mainly Beta Beta Barrel Upper collar protein gp10 (connector protein) fold Upper collar protein gp10 (connector protein)
E3 1jnbE03 Alpha Beta 2-Layer Sandwich Crambin Bacteriophage PHI-29 conector. Domain 3
F1 1jnbF01 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1
F2 1jnbF02 Mainly Beta Beta Barrel Upper collar protein gp10 (connector protein) fold Upper collar protein gp10 (connector protein)
F3 1jnbF03 Alpha Beta 2-Layer Sandwich Crambin Bacteriophage PHI-29 conector. Domain 3
G1 1jnbG01 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1
G2 1jnbG02 Mainly Beta Beta Barrel Upper collar protein gp10 (connector protein) fold Upper collar protein gp10 (connector protein)
G3 1jnbG03 Alpha Beta 2-Layer Sandwich Crambin Bacteriophage PHI-29 conector. Domain 3
H1 1jnbH01 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1
H2 1jnbH02 Mainly Beta Beta Barrel Upper collar protein gp10 (connector protein) fold Upper collar protein gp10 (connector protein)
H3 1jnbH03 Alpha Beta 2-Layer Sandwich Crambin Bacteriophage PHI-29 conector. Domain 3
I1 1jnbI01 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1
I2 1jnbI02 Mainly Beta Beta Barrel Upper collar protein gp10 (connector protein) fold Upper collar protein gp10 (connector protein)
I3 1jnbI03 Alpha Beta 2-Layer Sandwich Crambin Bacteriophage PHI-29 conector. Domain 3
J1 1jnbJ01 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1
J2 1jnbJ02 Mainly Beta Beta Barrel Upper collar protein gp10 (connector protein) fold Upper collar protein gp10 (connector protein)
J3 1jnbJ03 Alpha Beta 2-Layer Sandwich Crambin Bacteriophage PHI-29 conector. Domain 3
K1 1jnbK01 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1
K2 1jnbK02 Mainly Beta Beta Barrel Upper collar protein gp10 (connector protein) fold Upper collar protein gp10 (connector protein)
K3 1jnbK03 Alpha Beta 2-Layer Sandwich Crambin Bacteriophage PHI-29 conector. Domain 3
L1 1jnbL01 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1
L2 1jnbL02 Mainly Beta Beta Barrel Upper collar protein gp10 (connector protein) fold Upper collar protein gp10 (connector protein)
L3 1jnbL03 Alpha Beta 2-Layer Sandwich Crambin Bacteriophage PHI-29 conector. Domain 3

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF05352 Phage_connector Phage Connector (GP10) Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B,C,D,E,F,G,H,I,J,K,L UPPER COLLAR PROTEIN (1JNB:A,B,C,D,E,F,G,H,I,J,K,L)

Protein Modification Annotation

Type PDB Residue Nr. Description