Macromolecule Annotations for the Entities in PDB 1JMZ

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A2-85 d1jmza1 All alpha proteins Cytochrome c Cytochrome c Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 Pseudomonas putida [TaxId: 303]
A86-162 d1jmza2 All alpha proteins Cytochrome c Cytochrome c Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 Pseudomonas putida [TaxId: 303]
A282-363 d1jmza3 All beta proteins Immunoglobulin-like beta-sandwich E set domains Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 Pseudomonas putida [TaxId: 303]
A364-494 d1jmza4 All beta proteins Immunoglobulin-like beta-sandwich E set domains Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 Pseudomonas putida [TaxId: 303]
A163-281 d1jmza5 All beta proteins Streptavidin-like Quinohemoprotein amine dehydrogenase A chain, domain 3 Quinohemoprotein amine dehydrogenase A chain, domain 3 Quinohemoprotein amine dehydrogenase A chain, domain 3 Pseudomonas putida [TaxId: 303]
B d1jmzb_ All beta proteins 7-bladed beta-propeller YVTN repeat-like/Quinoprotein amine dehydrogenase Quinohemoprotein amine dehydrogenase B chain Quinohemoprotein amine dehydrogenase B chain Pseudomonas putida [TaxId: 303]
G d1jmzg_ All alpha proteins Non-globular all-alpha subunits of globular proteins Quinohemoprotein amine dehydrogenase C chain Quinohemoprotein amine dehydrogenase C chain Quinohemoprotein amine dehydrogenase C chain Pseudomonas putida [TaxId: 303]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF09098 Dehyd-heme_bind Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding Domain Members of this family are predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase. They have a predominantly alpha-helical structure and can be divided into two subdomains, each binding a haem C group via a conserved CXXCH motif [1,2]. PFAM PF09098
A PF09099 Qn_am_d_aIII Quinohemoprotein amine dehydrogenase, alpha subunit domain III Domain Members of this family, which are predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase, adopt an immunoglobulin-like beta-sandwich fold, with seven strands arranged into two beta sheets; the fold is possibly related to the immunoglobulin and/or fibronectin type III superfamilies. The precise function of this domain has not, as yet, been defined [1,2]. PFAM PF09099
A PF14930 Qn_am_d_aII Quinohemoprotein amine dehydrogenase, alpha subunit domain II Domain This is the second domain of the alpha subunit of quinohemoprotein amine dehydrogenase [1,2] PFAM PF14930
A PF09100 Qn_am_d_aIV Quinohemoprotein amine dehydrogenase, alpha subunit domain IV Domain Members of this family, which are predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase, adopt an immunoglobulin-like beta-sandwich fold, with seven strands arranged into two beta sheets; the fold is possibly related to the immunoglobulin and/or fibronectin type III superfamilies. The precise function of this domain has not, as yet, been defined [1,2]. PFAM PF09100
G PF08992 QH-AmDH_gamma Quinohemoprotein amine dehydrogenase, gamma subunit Domain Members of this family contain a cross-linked, proteinous quinone cofactor, cysteine tryptophylquinone, which is required for catalysis of the oxidative deamination of a wide range of aliphatic and aromatic amines. The domain assumes a globular secondary structure, with two short alpha-helices having many turns and bends [1]. PFAM PF08992

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A Amine Dehydrogenase (1JMZ:A)
  • none
  • none
B Amine Dehydrogenase (1JMZ:B)
  • none
  • none
  • none
G Amine Dehydrogenase (1JMZ:G)

Protein Modification Annotation

Type PDB Residue Nr. Description