Macromolecule Annotations for the Entities in PDB 1JMA

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF01537 Herpes_glycop_D Herpesvirus glycoprotein D/GG/GX domain Domain This domain is found in several Herpes viruses glycoproteins. This is a family includes glycoprotein-D (gD or gIV) which is common to herpes simplex virus types 1 and 2, as well as equine herpes, bovine herpes and Marek's disease virus. Glycoprotein-D has been found on the viral envelope and the plasma membrane of infected cells. and gD immunisation can produce an immune response to bovine herpes virus (BHV-1). This response is stronger than that of the other major glycoproteins gB (gI) and gC (gIII) in BHV-1. Glycoprotein G (gG)is one of the seven external glycoproteins of HSV1 and HSV2. This family also contains the glycoprotein GX, (gX), initially identified in Pseudorabies virus. PFAM PF01537
B PF00020 TNFR_c6 TNFR/NGFR cysteine-rich region Domain PFAM PF00020

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
B HERPESVIRUS ENTRY MEDIATOR (1JMA:B)
  • none
  • none
  • none
A GLYCOPROTEIN D (1JMA:A)
  • none
  • none
SUGAR (2-MER) (1JMA:)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description