Macromolecule Annotations for the Entities in PDB 1JJ2

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1jj21_ All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e Archaeon Haloarcula marismortui [TaxId: 2238]
2 d1jj22_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L44e Ribosomal protein L44e Archaeon Haloarcula marismortui [TaxId: 2238]
A91-237 d1jj2a1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
A1-90 d1jj2a2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
B d1jj2b_ All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 Archaeon Haloarcula marismortui [TaxId: 2238]
C d1jj2c_ Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Archaeon Haloarcula marismortui [TaxId: 2238]
D d1jj2d_ Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 Archaeon Haloarcula marismortui [TaxId: 2238]
E1-79 d1jj2e1 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
E80-172 d1jj2e2 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
F d1jj2f_ Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae Archaeon Haloarcula marismortui [TaxId: 2238]
G d1jj2g_ Peptides Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Archaeon Haloarcula marismortui [TaxId: 2238]
H d1jj2h_ Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e Archaeon Haloarcula marismortui [TaxId: 2238]
I d1jj2i_ Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Archaeon Haloarcula marismortui [TaxId: 2238]
J d1jj2j_ All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Archaeon Haloarcula marismortui [TaxId: 2238]
K d1jj2k_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) Archaeon Haloarcula marismortui [TaxId: 2238]
L d1jj2l_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L15e Ribosomal protein L15e Archaeon Haloarcula marismortui [TaxId: 2238]
M d1jj2m_ Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) Archaeon Haloarcula marismortui [TaxId: 2238]
N d1jj2n_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L18e Archaeon Haloarcula marismortui [TaxId: 2238]
O d1jj2o_ All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Archaeon Haloarcula marismortui [TaxId: 2238]
P d1jj2p_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L21e Archaeon Haloarcula marismortui [TaxId: 2238]
Q d1jj2q_ Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Archaeon Haloarcula marismortui [TaxId: 2238]
R d1jj2r_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 Archaeon Haloarcula marismortui [TaxId: 2238]
S d1jj2s_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) Archaeon Haloarcula marismortui [TaxId: 2238]
T d1jj2t_ Small proteins Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) Ribosomal protein L24e Ribosomal protein L24e Archaeon Haloarcula marismortui [TaxId: 2238]
U d1jj2u_ All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Archaeon Haloarcula marismortui [TaxId: 2238]
V d1jj2v_ Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Archaeal L30 (L30a) Archaeon Haloarcula marismortui [TaxId: 2238]
W d1jj2w_ Alpha and beta proteins (a+b) Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Archaeon Haloarcula marismortui [TaxId: 2238]
X d1jj2x_ Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e Archaeon Haloarcula marismortui [TaxId: 2238]
Y d1jj2y_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae Archaeon Haloarcula marismortui [TaxId: 2238]
Z d1jj2z_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37e Ribosomal protein L37e Archaeon Haloarcula marismortui [TaxId: 2238]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
1 1jj2100 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain; Chain: I; Ribosomal protein L39e
2 1jj2200 Alpha Beta Roll Nuclear Transport Factor 2; Chain: A,
A1 1jj2A01 Mainly Beta Roll SH3 type barrels.
A2 1jj2A02 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
A3 1jj2A03 Few Secondary Structures Irregular Ribosomal protein L2; domain 3 Ribosomal protein L2, domain 3
B1 1jj2B01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3 Translation factors
B2 1jj2B02 Alpha Beta 2-Layer Sandwich Ribosomal Protein L3; Chain: B; domain 2,
B3 1jj2B03 Few Secondary Structures Irregular Ribosomal protein L3; domain 3 Ribosomal protein L3, domain 3
C 1jj2C00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L4; Chain: A;
D 1jj2D00 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A,
E1 1jj2E01 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
E2 1jj2E02 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
F 1jj2F00 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A;
G 1jj2G00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A
H 1jj2H00 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
I 1jj2I00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A;
J 1jj2J00 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal Protein L14;
K1 1jj2K01 Few Secondary Structures Irregular Molecule: Ribosomal Protein L15; Chain: K; domain 1
K2 1jj2K02 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
L 1jj2L00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein l15e
M 1jj2M00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
N 1jj2N00 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
O1 1jj2O01 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1
O2 1jj2O02 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
P 1jj2P00 Mainly Beta Roll SH3 type barrels. Myosin S1 fragment SH3-like barrel
Q 1jj2Q00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal Protein L22; Chain A
R 1jj2R00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
S 1jj2S00 Mainly Beta Roll SH3 type barrels.
T 1jj2T00 Mainly Beta Roll Ribosomal Protein L24e; Chain: T;
U 1jj2U00 Mainly Alpha Orthogonal Bundle Helix Hairpins
V1 1jj2V01 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A,
V2 1jj2V02 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3
W 1jj2W00 Alpha Beta Roll Ribosomal Protein L31e; Chain: W;
Y 1jj2Y00 Mainly Beta Single Sheet N-terminal domain of TfIIb
Z 1jj2Z00 Mainly Beta Single Sheet N-terminal domain of TfIIb

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
0 23S RRNA (1JJ2:0)
  • none
  • none
  • none
9 5S RRNA (1JJ2:9)
  • none
  • none
  • none
A RIBOSOMAL PROTEIN L2 (1JJ2:A)
B RIBOSOMAL PROTEIN L3 (1JJ2:B)
C RIBOSOMAL PROTEIN L4 (1JJ2:C)
D RIBOSOMAL PROTEIN L5 (1JJ2:D)
E RIBOSOMAL PROTEIN L6 (1JJ2:E)
F RIBOSOMAL PROTEIN L7AE (1JJ2:F)
G RIBOSOMAL PROTEIN L10 (1JJ2:G)
H RIBOSOMAL PROTEIN L10E (1JJ2:H)
I RIBOSOMAL PROTEIN L13 (1JJ2:I)
J RIBOSOMAL PROTEIN L14 (1JJ2:J)
K RIBOSOMAL PROTEIN L15 (1JJ2:K)
L RIBOSOMAL PROTEIN L15E (1JJ2:L)
M RIBOSOMAL PROTEIN L18 (1JJ2:M)
N RIBOSOMAL PROTEIN L18E (1JJ2:N)
O RIBOSOMAL PROTEIN L19E (1JJ2:O)
P RIBOSOMAL PROTEIN L21E (1JJ2:P)
Q RIBOSOMAL PROTEIN L22 (1JJ2:Q)
R RIBOSOMAL PROTEIN L23 (1JJ2:R)
S RIBOSOMAL PROTEIN L24 (1JJ2:S)
T RIBOSOMAL PROTEIN L24E (1JJ2:T)
U RIBOSOMAL PROTEIN L29 (1JJ2:U)
V RIBOSOMAL PROTEIN L30 (1JJ2:V)
W RIBOSOMAL PROTEIN L31E (1JJ2:W)
X RIBOSOMAL PROTEIN L32E (1JJ2:X)
Y RIBOSOMAL PROTEIN L37Ae (1JJ2:Y)
Z RIBOSOMAL PROTEIN L37E (1JJ2:Z)
1 RIBOSOMAL PROTEIN L39E (1JJ2:1)
2 RIBOSOMAL PROTEIN L44E (1JJ2:2)

Protein Modification Annotation

Type PDB Residue Nr. Description