Macromolecule Annotations for the Entities in PDB 1JGP

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
E d1jgpe_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
F d1jgpf_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
G d1jgpg_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
H d1jgph_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
I d1jgpi_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
J d1jgpj_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
K d1jgpk_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
L d1jgpl_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
M d1jgpm_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
N d1jgpn_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
O d1jgpo_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
P d1jgpp_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
Q d1jgpq_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
R d1jgpr_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
S d1jgps_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
T d1jgpt_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
U d1jgpu_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
V d1jgpv_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
W d1jgpw_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
X d1jgpx_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
G PF01479 S4 S4 domain Domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. PFAM PF01479
Q PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e Family
F PF07650 KH_2 KH domain Domain PFAM PF07650
H PF00333 Ribosomal_S5 Ribosomal protein S5, N-terminal domain Domain PFAM PF00333
R PF00312 Ribosomal_S15 Ribosomal protein S15 Domain PFAM PF00312
G PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain Family
I PF01250 Ribosomal_S6 Ribosomal protein S6 Domain PFAM PF01250
T PF00366 Ribosomal_S17 Ribosomal protein S17 Domain PFAM PF00366
O PF00164 Ribosom_S12_S23 Ribosomal protein S12/S23 Family
E PF00318 Ribosomal_S2 Ribosomal protein S2 Family
J PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e Domain This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. PFAM PF00177
H PF03719 Ribosomal_S5_C Ribosomal protein S5, C-terminal domain Domain PFAM PF03719
W PF01649 Ribosomal_S20p Ribosomal protein S20 Family
V PF00203 Ribosomal_S19 Ribosomal protein S19 Domain PFAM PF00203
U PF01084 Ribosomal_S18 Ribosomal protein S18 Family
N PF00411 Ribosomal_S11 Ribosomal protein S11 Family
S PF00886 Ribosomal_S16 Ribosomal protein S16 Family
F PF00189 Ribosomal_S3_C Ribosomal protein S3, C-terminal domain Domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. PFAM PF00189
M PF00338 Ribosomal_S10 Ribosomal protein S10p/S20e Family
K PF00410 Ribosomal_S8 Ribosomal protein S8 Domain PFAM PF00410
P PF00416 Ribosomal_S13 Ribosomal protein S13/S18 Family
L PF00380 Ribosomal_S9 Ribosomal protein S9/S16 Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 30S 16S ribosomal RNA (1JGP:A)
  • none
  • none
  • none
B,C tRNA(Phe) (1JGP:B,C)
  • none
  • none
  • none
D tRNA(Phe) (1JGP:D)
  • none
  • none
  • none
1 MESSENGER RNA MV36 (1JGP:1)
  • none
  • none
  • none
E 30S RIBOSOMAL PROTEIN S2 (1JGP:E)
F 30S RIBOSOMAL PROTEIN S3 (1JGP:F)
G 30S RIBOSOMAL PROTEIN S4 (1JGP:G)
H 30S RIBOSOMAL PROTEIN S5 (1JGP:H)
I 30S RIBOSOMAL PROTEIN S6 (1JGP:I)
J 30S RIBOSOMAL PROTEIN S7 (1JGP:J)
K 30S RIBOSOMAL PROTEIN S8 (1JGP:K)
L 30S RIBOSOMAL PROTEIN S9 (1JGP:L)
M 30S RIBOSOMAL PROTEIN S10 (1JGP:M)
N 30S RIBOSOMAL PROTEIN S11 (1JGP:N)
O 30S RIBOSOMAL PROTEIN S12 (1JGP:O)
P 30S RIBOSOMAL PROTEIN S13 (1JGP:P)
Q 30S RIBOSOMAL PROTEIN S14 (1JGP:Q)
R 30S RIBOSOMAL PROTEIN S15 (1JGP:R)
S 30S RIBOSOMAL PROTEIN S16 (1JGP:S)
T 30S RIBOSOMAL PROTEIN S17 (1JGP:T)
U 30S RIBOSOMAL PROTEIN S18 (1JGP:U)
V 30S RIBOSOMAL PROTEIN S19 (1JGP:V)
W 30S RIBOSOMAL PROTEIN S20 (1JGP:W)
X 30S RIBOSOMAL PROTEIN THX (1JGP:X)
  • none