1JGP

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY


Macromolecule Annotations for the Entities in PDB 1JGP

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
E d1jgpe_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
F d1jgpf_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
G d1jgpg_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
H d1jgph_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
I d1jgpi_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
J d1jgpj_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
K d1jgpk_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
L d1jgpl_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
M d1jgpm_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
N d1jgpn_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
O d1jgpo_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
P d1jgpp_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
Q d1jgpq_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
R d1jgpr_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
S d1jgps_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
T d1jgpt_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
U d1jgpu_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
V d1jgpv_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
W d1jgpw_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]
X d1jgpx_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex Thermus thermophilus [TaxId: 274]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
F PF07650 KH_2 KH domain Domain PFAM PF07650
Q PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e Family
L PF00380 Ribosomal_S9 Ribosomal protein S9/S16 Family
M PF00338 Ribosomal_S10 Ribosomal protein S10p/S20e Family
S PF00886 Ribosomal_S16 Ribosomal protein S16 Family
P PF00416 Ribosomal_S13 Ribosomal protein S13/S18 Family
R PF00312 Ribosomal_S15 Ribosomal protein S15 Domain PFAM PF00312
G PF01479 S4 S4 domain Domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. PFAM PF01479
H PF03719 Ribosomal_S5_C Ribosomal protein S5, C-terminal domain Domain PFAM PF03719
O PF00164 Ribosom_S12_S23 Ribosomal protein S12/S23 Family
W PF01649 Ribosomal_S20p Ribosomal protein S20 Family
T PF00366 Ribosomal_S17 Ribosomal protein S17 Domain PFAM PF00366
N PF00411 Ribosomal_S11 Ribosomal protein S11 Family
J PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e Domain This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. PFAM PF00177
H PF00333 Ribosomal_S5 Ribosomal protein S5, N-terminal domain Domain PFAM PF00333
E PF00318 Ribosomal_S2 Ribosomal protein S2 Family
K PF00410 Ribosomal_S8 Ribosomal protein S8 Domain PFAM PF00410
V PF00203 Ribosomal_S19 Ribosomal protein S19 Domain PFAM PF00203
U PF01084 Ribosomal_S18 Ribosomal protein S18 Family
G PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain Family
I PF01250 Ribosomal_S6 Ribosomal protein S6 Domain PFAM PF01250
F PF00189 Ribosomal_S3_C Ribosomal protein S3, C-terminal domain Domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. PFAM PF00189

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 30S 16S ribosomal RNA (1JGP:A)
  • none
  • none
  • none
B,C tRNA(Phe) (1JGP:B,C)
  • none
  • none
  • none
D tRNA(Phe) (1JGP:D)
  • none
  • none
  • none
1 MESSENGER RNA MV36 (1JGP:1)
  • none
  • none
  • none
E 30S RIBOSOMAL PROTEIN S2 (1JGP:E)
F 30S RIBOSOMAL PROTEIN S3 (1JGP:F)
G 30S RIBOSOMAL PROTEIN S4 (1JGP:G)
H 30S RIBOSOMAL PROTEIN S5 (1JGP:H)
I 30S RIBOSOMAL PROTEIN S6 (1JGP:I)
J 30S RIBOSOMAL PROTEIN S7 (1JGP:J)
K 30S RIBOSOMAL PROTEIN S8 (1JGP:K)
L 30S RIBOSOMAL PROTEIN S9 (1JGP:L)
M 30S RIBOSOMAL PROTEIN S10 (1JGP:M)
N 30S RIBOSOMAL PROTEIN S11 (1JGP:N)
O 30S RIBOSOMAL PROTEIN S12 (1JGP:O)
P 30S RIBOSOMAL PROTEIN S13 (1JGP:P)
Q 30S RIBOSOMAL PROTEIN S14 (1JGP:Q)
R 30S RIBOSOMAL PROTEIN S15 (1JGP:R)
S 30S RIBOSOMAL PROTEIN S16 (1JGP:S)
T 30S RIBOSOMAL PROTEIN S17 (1JGP:T)
U 30S RIBOSOMAL PROTEIN S18 (1JGP:U)
V 30S RIBOSOMAL PROTEIN S19 (1JGP:V)
W 30S RIBOSOMAL PROTEIN S20 (1JGP:W)
X 30S RIBOSOMAL PROTEIN THX (1JGP:X)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description