Macromolecule Annotations for the Entities in PDB 1JDB

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
B403-555 d1jdbb1 All alpha proteins Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Escherichia coli [TaxId: 562]
E403-555 d1jdbe1 All alpha proteins Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Escherichia coli [TaxId: 562]
H403-555 d1jdbh1 All alpha proteins Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Escherichia coli [TaxId: 562]
K403-555 d1jdbk1 All alpha proteins Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Escherichia coli [TaxId: 562]
C2-152 d1jdbc1 Alpha and beta proteins (a/b) The "swivelling" beta/beta/alpha domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Escherichia coli [TaxId: 562]
F2-152 d1jdbf1 Alpha and beta proteins (a/b) The "swivelling" beta/beta/alpha domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Escherichia coli [TaxId: 562]
I2-152 d1jdbi1 Alpha and beta proteins (a/b) The "swivelling" beta/beta/alpha domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Escherichia coli [TaxId: 562]
L2-152 d1jdbl1 Alpha and beta proteins (a/b) The "swivelling" beta/beta/alpha domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Escherichia coli [TaxId: 562]
C153-380 d1jdbc2 Alpha and beta proteins (a/b) Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferases (GAT) Carbamoyl phosphate synthetase, small subunit C- terminal domain Escherichia coli [TaxId: 562]
F153-381 d1jdbf2 Alpha and beta proteins (a/b) Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferases (GAT) Carbamoyl phosphate synthetase, small subunit C- terminal domain Escherichia coli [TaxId: 562]
I153-380 d1jdbi2 Alpha and beta proteins (a/b) Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferases (GAT) Carbamoyl phosphate synthetase, small subunit C- terminal domain Escherichia coli [TaxId: 562]
L153-380 d1jdbl2 Alpha and beta proteins (a/b) Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferases (GAT) Carbamoyl phosphate synthetase, small subunit C- terminal domain Escherichia coli [TaxId: 562]
B936-1072 d1jdbb2 Alpha and beta proteins (a/b) Methylglyoxal synthase-like Methylglyoxal synthase-like Carbamoyl phosphate synthetase, large subunit allosteric, C- terminal domain Carbamoyl phosphate synthetase, large subunit allosteric, C- terminal domain Escherichia coli [TaxId: 562]
E936-1072 d1jdbe2 Alpha and beta proteins (a/b) Methylglyoxal synthase-like Methylglyoxal synthase-like Carbamoyl phosphate synthetase, large subunit allosteric, C- terminal domain Carbamoyl phosphate synthetase, large subunit allosteric, C- terminal domain Escherichia coli [TaxId: 562]
H936-1072 d1jdbh2 Alpha and beta proteins (a/b) Methylglyoxal synthase-like Methylglyoxal synthase-like Carbamoyl phosphate synthetase, large subunit allosteric, C- terminal domain Carbamoyl phosphate synthetase, large subunit allosteric, C- terminal domain Escherichia coli [TaxId: 562]
K936-1072 d1jdbk2 Alpha and beta proteins (a/b) Methylglyoxal synthase-like Methylglyoxal synthase-like Carbamoyl phosphate synthetase, large subunit allosteric, C- terminal domain Carbamoyl phosphate synthetase, large subunit allosteric, C- terminal domain Escherichia coli [TaxId: 562]
B0-127 d1jdbb3 Alpha and beta proteins (a/b) PreATP-grasp domain PreATP-grasp domain BC N-terminal domain-like Carbamoyl phosphate synthetase (CPS), large subunit PreATP- grasp domains Escherichia coli [TaxId: 562]
B556-676 d1jdbb4 Alpha and beta proteins (a/b) PreATP-grasp domain PreATP-grasp domain BC N-terminal domain-like Carbamoyl phosphate synthetase (CPS), large subunit PreATP- grasp domains Escherichia coli [TaxId: 562]
E1-127 d1jdbe3 Alpha and beta proteins (a/b) PreATP-grasp domain PreATP-grasp domain BC N-terminal domain-like Carbamoyl phosphate synthetase (CPS), large subunit PreATP- grasp domains Escherichia coli [TaxId: 562]
E556-676 d1jdbe4 Alpha and beta proteins (a/b) PreATP-grasp domain PreATP-grasp domain BC N-terminal domain-like Carbamoyl phosphate synthetase (CPS), large subunit PreATP- grasp domains Escherichia coli [TaxId: 562]
H0-127 d1jdbh3 Alpha and beta proteins (a/b) PreATP-grasp domain PreATP-grasp domain BC N-terminal domain-like Carbamoyl phosphate synthetase (CPS), large subunit PreATP- grasp domains Escherichia coli [TaxId: 562]
H556-676 d1jdbh4 Alpha and beta proteins (a/b) PreATP-grasp domain PreATP-grasp domain BC N-terminal domain-like Carbamoyl phosphate synthetase (CPS), large subunit PreATP- grasp domains Escherichia coli [TaxId: 562]
K0-127 d1jdbk3 Alpha and beta proteins (a/b) PreATP-grasp domain PreATP-grasp domain BC N-terminal domain-like Carbamoyl phosphate synthetase (CPS), large subunit PreATP- grasp domains Escherichia coli [TaxId: 562]
K556-676 d1jdbk4 Alpha and beta proteins (a/b) PreATP-grasp domain PreATP-grasp domain BC N-terminal domain-like Carbamoyl phosphate synthetase (CPS), large subunit PreATP- grasp domains Escherichia coli [TaxId: 562]
B128-402 d1jdbb5 Alpha and beta proteins (a+b) ATP-grasp Glutathione synthetase ATP-binding domain- like BC ATP-binding domain-like Carbamoyl phosphate synthetase (CPS), large subunit ATP- binding domains Escherichia coli [TaxId: 562]
B677-935 d1jdbb6 Alpha and beta proteins (a+b) ATP-grasp Glutathione synthetase ATP-binding domain- like BC ATP-binding domain-like Carbamoyl phosphate synthetase (CPS), large subunit ATP- binding domains Escherichia coli [TaxId: 562]
E128-402 d1jdbe5 Alpha and beta proteins (a+b) ATP-grasp Glutathione synthetase ATP-binding domain- like BC ATP-binding domain-like Carbamoyl phosphate synthetase (CPS), large subunit ATP- binding domains Escherichia coli [TaxId: 562]
E677-935 d1jdbe6 Alpha and beta proteins (a+b) ATP-grasp Glutathione synthetase ATP-binding domain- like BC ATP-binding domain-like Carbamoyl phosphate synthetase (CPS), large subunit ATP- binding domains Escherichia coli [TaxId: 562]
H128-402 d1jdbh5 Alpha and beta proteins (a+b) ATP-grasp Glutathione synthetase ATP-binding domain- like BC ATP-binding domain-like Carbamoyl phosphate synthetase (CPS), large subunit ATP- binding domains Escherichia coli [TaxId: 562]
H677-935 d1jdbh6 Alpha and beta proteins (a+b) ATP-grasp Glutathione synthetase ATP-binding domain- like BC ATP-binding domain-like Carbamoyl phosphate synthetase (CPS), large subunit ATP- binding domains Escherichia coli [TaxId: 562]
K128-402 d1jdbk5 Alpha and beta proteins (a+b) ATP-grasp Glutathione synthetase ATP-binding domain- like BC ATP-binding domain-like Carbamoyl phosphate synthetase (CPS), large subunit ATP- binding domains Escherichia coli [TaxId: 562]
K677-935 d1jdbk6 Alpha and beta proteins (a+b) ATP-grasp Glutathione synthetase ATP-binding domain- like BC ATP-binding domain-like Carbamoyl phosphate synthetase (CPS), large subunit ATP- binding domains Escherichia coli [TaxId: 562]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
B1 1jdbB01 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
B2 1jdbB02 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 ATP-grasp fold, B domain
B3 1jdbB03 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 ATP-grasp fold, A domain
B4 1jdbB04 Mainly Alpha Orthogonal Bundle Carbamoyl Phosphate Synthetase; Chain A, domain 4 Carbamoyl Phosphate Synthetase; Chain A, domain 4
B5 1jdbB05 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
B6 1jdbB06 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 ATP-grasp fold, B domain
B7 1jdbB07 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 ATP-grasp fold, A domain
B8 1jdbB08 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
C1 1jdbC01 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Carbamoyl phosphate synthetase, small subunit N- terminal domain
C2 1jdbC02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
E1 1jdbE01 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
E2 1jdbE02 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 ATP-grasp fold, B domain
E3 1jdbE03 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 ATP-grasp fold, A domain
E4 1jdbE04 Mainly Alpha Orthogonal Bundle Carbamoyl Phosphate Synthetase; Chain A, domain 4 Carbamoyl Phosphate Synthetase; Chain A, domain 4
E5 1jdbE05 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
E6 1jdbE06 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 ATP-grasp fold, B domain
E7 1jdbE07 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 ATP-grasp fold, A domain
E8 1jdbE08 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
F1 1jdbF01 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Carbamoyl phosphate synthetase, small subunit N- terminal domain
F2 1jdbF02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
H1 1jdbH01 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
H2 1jdbH02 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 ATP-grasp fold, B domain
H3 1jdbH03 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 ATP-grasp fold, A domain
H4 1jdbH04 Mainly Alpha Orthogonal Bundle Carbamoyl Phosphate Synthetase; Chain A, domain 4 Carbamoyl Phosphate Synthetase; Chain A, domain 4
H5 1jdbH05 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
H6 1jdbH06 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 ATP-grasp fold, B domain
H7 1jdbH07 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 ATP-grasp fold, A domain
H8 1jdbH08 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
I1 1jdbI01 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Carbamoyl phosphate synthetase, small subunit N- terminal domain
I2 1jdbI02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
K1 1jdbK01 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
K2 1jdbK02 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 ATP-grasp fold, B domain
K3 1jdbK03 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 ATP-grasp fold, A domain
K4 1jdbK04 Mainly Alpha Orthogonal Bundle Carbamoyl Phosphate Synthetase; Chain A, domain 4 Carbamoyl Phosphate Synthetase; Chain A, domain 4
K5 1jdbK05 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
K6 1jdbK06 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 ATP-grasp fold, B domain
K7 1jdbK07 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 ATP-grasp fold, A domain
K8 1jdbK08 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
L1 1jdbL01 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Carbamoyl phosphate synthetase, small subunit N- terminal domain
L2 1jdbL02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Protein Modification Annotation

Type PDB Residue Nr. Description