Macromolecule Annotations for the Entities in PDB 1JCK

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A3-117 d1jcka1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Mouse (Mus musculus), beta-chain [TaxId: 10090]
C3-117 d1jckc1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Mouse (Mus musculus), beta-chain [TaxId: 10090]
A118-246 d1jcka2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) T-cell antigen receptor Mouse (Mus musculus), beta-chain [TaxId: 10090]
C118-246 d1jckc2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) T-cell antigen receptor Mouse (Mus musculus), beta-chain [TaxId: 10090]
B1-121 d1jckb1 All beta proteins OB-fold Bacterial enterotoxins Superantigen toxins, N-terminal domain Staphylococcal enterotoxin C3, SEC3 Staphylococcus aureus [TaxId: 1280]
D1-121 d1jckd1 All beta proteins OB-fold Bacterial enterotoxins Superantigen toxins, N-terminal domain Staphylococcal enterotoxin C3, SEC3 Staphylococcus aureus [TaxId: 1280]
B122-239 d1jckb2 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Superantigen toxins, C-terminal domain Superantigen toxins, C-terminal domain Staphylococcal enterotoxin C3, SEC3 Staphylococcus aureus [TaxId: 1280]
D122-239 d1jckd2 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Superantigen toxins, C-terminal domain Superantigen toxins, C-terminal domain Staphylococcal enterotoxin C3, SEC3 Staphylococcus aureus [TaxId: 1280]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF01123 Stap_Strp_toxin Staphylococcal/Streptococcal toxin, OB-fold domain Family
B PF02876 Stap_Strp_tox_C Staphylococcal/Streptococcal toxin, beta-grasp domain Family
A PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
A PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,C 14.3.D T CELL ANTIGEN RECEPTOR (1JCK:A,C)
  • none
  • none
  • none
B,D STAPHYLOCOCCAL ENTEROTOXIN C3 (1JCK:B,D)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description