Macromolecule Annotations for the Entities in PDB 1J8H

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A82-181 d1j8ha1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC alpha chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
A2-81 d1j8ha2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain Human (Homo sapiens), HLA-DR4 [TaxId: 9606]
B93-190 d1j8hb1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC beta chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
B3-92 d1j8hb2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain Human (Homo sapiens), HLA-DR4 [TaxId: 9606]
D1-117 d1j8hd1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Human (Homo sapiens), alpha-chain [TaxId: 9606]
D118-203 d1j8hd2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) T-cell antigen receptor Human (Homo sapiens), alpha-chain [TaxId: 9606]
E2-118 d1j8he1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Human (Homo sapiens), beta-chain [TaxId: 9606]
E119-246 d1j8he2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) T-cell antigen receptor Human (Homo sapiens), beta-chain [TaxId: 9606]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
D PF09291 DUF1968 Domain of unknown function (DUF1968) Domain Members of this family are found in mammalian T-cell antigen receptor, and adopt an immunoglobulin-like beta-sandwich fold, with seven strands in two beta-sheets in a Greek-key topology. Their exact function has not, as yet, been determined. PFAM PF09291
E PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
A PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
B PF00969 MHC_II_beta Class II histocompatibility antigen, beta domain Domain PFAM PF00969
B PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
E PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
A PF00993 MHC_II_alpha Class II histocompatibility antigen, alpha domain Domain PFAM PF00993
D PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN (1J8H:A)
  • none
B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR- 4 BETA CHAIN (1J8H:B)
  • none
C HEMAGGLUTININ HA1 PEPTIDE CHAIN (1J8H:C)
  • none
  • none
  • none
D T-CELL RECEPTOR ALPHA CHAIN (1J8H:D)
  • none
  • none
  • none
E T-CELL RECEPTOR BETA CHAIN (1J8H:E)
  • none
  • none
  • none
SUGAR (NAG-NAG) (1J8H:)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description