Macromolecule Annotations for the Entities in PDB 1J5O

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A430-558 d1j5oa1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like Ribonuclease H HIV RNase H (Domain of reverse transcriptase) Human immunodeficiency virus type 1 [TaxId: 11676]
A1-429 d1j5oa2 Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase HIV-1 reverse transcriptase Human immunodeficiency virus type 1 [TaxId: 11676]
B d1j5ob_ Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase HIV-1 reverse transcriptase Human immunodeficiency virus type 1 [TaxId: 11676]
H1-123 d1j5oh1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Mouse (Mus musculus), cluster 6 [TaxId: 10090]
H124-220 d1j5oh2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Mouse (Mus musculus) [TaxId: 10090]
L1-107 d1j5ol1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Mouse (Mus musculus), cluster 4 [TaxId: 10090]
L108-214 d1j5ol2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Mouse (Mus musculus) [TaxId: 10090]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
T 5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)- 3' (1J5O:T)
  • none
  • none
  • none
P 5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)- 3' (1J5O:P)
  • none
  • none
  • none
A Reverse transcriptase (1J5O:A)
  • none
B Reverse transcriptase (1J5O:B)
  • none
L ANTIBODY (LIGHT CHAIN) (1J5O:L)
  • none
  • none
  • none
H ANTIBODY (HEAVY CHAIN) (1J5O:H)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description