Macromolecule Annotations for the Entities in PDB 1IR2

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1ir21_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
2 d1ir22_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
3 d1ir23_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
4 d1ir24_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
5 d1ir25_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
6 d1ir26_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
7 d1ir27_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
8 d1ir28_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
A150-475 d1ir2a1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
A8-149 d1ir2a2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
B150-475 d1ir2b1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
B9-149 d1ir2b2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
C150-475 d1ir2c1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
C10-149 d1ir2c2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
D150-475 d1ir2d1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
D9-149 d1ir2d2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
E150-475 d1ir2e1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
E11-149 d1ir2e2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
F150-475 d1ir2f1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
F11-149 d1ir2f2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
G150-475 d1ir2g1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
G10-149 d1ir2g2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
H150-475 d1ir2h1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
H8-149 d1ir2h2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
I d1ir2i_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
J d1ir2j_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
K d1ir2k_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
L d1ir2l_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
M d1ir2m_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
N d1ir2n_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
O d1ir2o_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
P d1ir2p_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
S150-475 d1ir2s1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
S11-149 d1ir2s2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
T150-475 d1ir2t1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
T10-149 d1ir2t2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
U150-475 d1ir2u1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
U7-149 d1ir2u2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
V150-475 d1ir2v1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
V7-149 d1ir2v2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
W150-475 d1ir2w1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
W10-149 d1ir2w2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
X150-475 d1ir2x1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
X10-149 d1ir2x2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
Y150-475 d1ir2y1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
Y11-149 d1ir2y2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
Z150-475 d1ir2z1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]
Z10-149 d1ir2z2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Chlamydomonas reinhardtii [TaxId: 3055]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
1 1ir2100 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase RuBisCO, small subunit
2 1ir2200 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase RuBisCO, small subunit
3 1ir2300 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase RuBisCO, small subunit
4 1ir2400 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase RuBisCO, small subunit
5 1ir2500 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase RuBisCO, small subunit
6 1ir2600 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase RuBisCO, small subunit
7 1ir2700 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase RuBisCO, small subunit
8 1ir2800 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase RuBisCO, small subunit
A1 1ir2A01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
A2 1ir2A02 Alpha Beta Alpha-Beta Barrel TIM Barrel Rubisco
B1 1ir2B01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
B2 1ir2B02 Alpha Beta Alpha-Beta Barrel TIM Barrel Rubisco
C1 1ir2C01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
C2 1ir2C02 Alpha Beta Alpha-Beta Barrel TIM Barrel Rubisco
D1 1ir2D01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
D2 1ir2D02 Alpha Beta Alpha-Beta Barrel TIM Barrel Rubisco
E1 1ir2E01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
E2 1ir2E02 Alpha Beta Alpha-Beta Barrel TIM Barrel Rubisco
F1 1ir2F01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
F2 1ir2F02 Alpha Beta Alpha-Beta Barrel TIM Barrel Rubisco
G1 1ir2G01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
G2 1ir2G02 Alpha Beta Alpha-Beta Barrel TIM Barrel Rubisco
H1 1ir2H01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
H2 1ir2H02 Alpha Beta Alpha-Beta Barrel TIM Barrel Rubisco
I 1ir2I00 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase RuBisCO, small subunit
J 1ir2J00 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase RuBisCO, small subunit
K 1ir2K00 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase RuBisCO, small subunit
L 1ir2L00 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase RuBisCO, small subunit
M 1ir2M00 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase RuBisCO, small subunit
N 1ir2N00 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase RuBisCO, small subunit
O 1ir2O00 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase RuBisCO, small subunit
P 1ir2P00 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase RuBisCO, small subunit
S1 1ir2S01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
S2 1ir2S02 Alpha Beta Alpha-Beta Barrel TIM Barrel Rubisco
T1 1ir2T01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
T2 1ir2T02 Alpha Beta Alpha-Beta Barrel TIM Barrel Rubisco
U1 1ir2U01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
U2 1ir2U02 Alpha Beta Alpha-Beta Barrel TIM Barrel Rubisco
V1 1ir2V01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
V2 1ir2V02 Alpha Beta Alpha-Beta Barrel TIM Barrel Rubisco
W1 1ir2W01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
W2 1ir2W02 Alpha Beta Alpha-Beta Barrel TIM Barrel Rubisco
X1 1ir2X01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
X2 1ir2X02 Alpha Beta Alpha-Beta Barrel TIM Barrel Rubisco
Y1 1ir2Y01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
Y2 1ir2Y02 Alpha Beta Alpha-Beta Barrel TIM Barrel Rubisco
Z1 1ir2Z01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
Z2 1ir2Z02 Alpha Beta Alpha-Beta Barrel TIM Barrel Rubisco

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF02788 RuBisCO_large_N Ribulose bisphosphate carboxylase large chain, N-terminal domain Domain The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. PFAM PF02788
1 PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain Domain PFAM PF00101
A PF00016 RuBisCO_large Ribulose bisphosphate carboxylase large chain, catalytic domain Domain The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. PFAM PF00016

Gene Product Annotation Gene Ontology Consortium Homepage

Protein Modification Annotation

Type PDB Residue Nr. Description