Macromolecule Annotations for the Entities in PDB 1I9R

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1i9ra_ All beta proteins TNF-like TNF-like TNF-like Extracellular domain of CD40 ligand Human (Homo sapiens) [TaxId: 9606]
B d1i9rb_ All beta proteins TNF-like TNF-like TNF-like Extracellular domain of CD40 ligand Human (Homo sapiens) [TaxId: 9606]
C d1i9rc_ All beta proteins TNF-like TNF-like TNF-like Extracellular domain of CD40 ligand Human (Homo sapiens) [TaxId: 9606]
H1-118 d1i9rh1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Engineered (including hybrid species)
H119-219 d1i9rh2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Human (Homo sapiens) [TaxId: 9606]
K1-118 d1i9rk1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Engineered (including hybrid species)
K119-219 d1i9rk2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Human (Homo sapiens) [TaxId: 9606]
L1-111 d1i9rl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Engineered (including hybrid species)
L112-215 d1i9rl2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Human (Homo sapiens) [TaxId: 9606]
M1-111 d1i9rm1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Engineered (including hybrid species)
M112-215 d1i9rm2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Human (Homo sapiens) [TaxId: 9606]
X1-118 d1i9rx1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Engineered (including hybrid species)
X119-219 d1i9rx2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Human (Homo sapiens) [TaxId: 9606]
Y1-111 d1i9ry1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Engineered (including hybrid species)
Y112-215 d1i9ry2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Human (Homo sapiens) [TaxId: 9606]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF00229 TNF TNF(Tumour Necrosis Factor) family Domain PFAM PF00229
H PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
L PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
H PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
L PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B,C CD40 LIGAND (1I9R:A,B,C)
H,K,X IMMUNOGLOBULIN H (1I9R:H,K,X)
  • none
  • none
  • none
L,M,Y IMMUNOGLOBULIN L (1I9R:L,M,Y)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description