Macromolecule Annotations for the Entities in PDB 1I6H

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1i6ha_ Multi-domain proteins (alpha and beta) beta and beta-prime subunits of DNA dependent RNA- polymerase beta and beta-prime subunits of DNA dependent RNA- polymerase RNA-polymerase beta-prime RBP1 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
B d1i6hb_ Multi-domain proteins (alpha and beta) beta and beta-prime subunits of DNA dependent RNA- polymerase beta and beta-prime subunits of DNA dependent RNA- polymerase RNA-polymerase beta RBP2 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
C3-41,C173-268 d1i6hc1 Alpha and beta proteins (a+b) DCoH-like RBP11-like subunits of RNA polymerase RNA polymerase alpha subunit dimerisation domain RPB3 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
C42-172 d1i6hc2 Alpha and beta proteins (a+b) Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit RPB3 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
E2-143 d1i6he1 Alpha and beta proteins (a/b) Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
E144-215 d1i6he2 Alpha and beta proteins (a+b) RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5 Eukaryotic RPB5 C-terminal domain Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
F d1i6hf_ All alpha proteins RPB6/omega subunit-like RPB6/omega subunit-like RPB6 RPB6 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
H d1i6hh_ All beta proteins OB-fold Nucleic acid-binding proteins RNA polymerase subunit RBP8 RNA polymerase subunit RBP8 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
I2-49 d1i6hi1 Small proteins Rubredoxin-like Zinc beta-ribbon Transcriptional factor domain RBP9 subunit of RNA polymerase II Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
I50-120 d1i6hi2 Small proteins Rubredoxin-like Zinc beta-ribbon Transcriptional factor domain RBP9 subunit of RNA polymerase II Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
J d1i6hj_ All alpha proteins DNA/RNA-binding 3-helical bundle RNA polymerase subunit RPB10 RNA polymerase subunit RPB10 RNA polymerase subunit RPB10 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
K d1i6hk_ Alpha and beta proteins (a+b) DCoH-like RBP11-like subunits of RNA polymerase RBP11/RpoL RPB11 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
L d1i6hl_ Small proteins Rubredoxin-like RNA polymerase subunits RBP12 subunit of RNA polymerase II RBP12 subunit of RNA polymerase II Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
D 5'-D(P*AP*AP*AP*TP*GP*CP*CP*TP*GP*GP*TP*CP*T)- 3' (1I6H:D)
  • none
  • none
  • none
R 5'-R(P*GP*AP*CP*CP*AP*GP*GP*CP*A)-3' (1I6H:R)
  • none
  • none
  • none
A DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT (1I6H:A)
B DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE (1I6H:B)
C DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE (1I6H:C)
E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE (1I6H:E)
F DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE (1I6H:F)
H DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE (1I6H:H)
I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE (1I6H:I)
J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE (1I6H:J)
K DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE (1I6H:K)
L DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE (1I6H:L)

Protein Modification Annotation

Type PDB Residue Nr. Description