Macromolecule Annotations for the Entities in PDB 1I5L

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1i5la_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
B d1i5lb_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
C d1i5lc_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
D d1i5ld_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
E d1i5le_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
F d1i5lf_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
G d1i5lg_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
H d1i5lh_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
I d1i5li_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
J d1i5lj_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
K d1i5lk_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
L d1i5ll_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
M d1i5lm_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
N d1i5ln_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF01423 LSM LSM domain Domain The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings. PFAM PF01423

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
U,Y 5'-R(*UP*UP*U)-3' (1I5L:U,Y)
  • none
  • none
  • none
A,B,C,D,E,F,G,H,I,J,K,L,M,N PUTATIVE SNRNP SM-LIKE PROTEIN AF-SM1 (1I5L:A,B,C,D,E,F,G,H,I,J,K,L,M,N)
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description