Macromolecule Annotations for the Entities in PDB 1I4K

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1i4k1_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
2 d1i4k2_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
A d1i4ka_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
B d1i4kb_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
C d1i4kc_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
D d1i4kd_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
E d1i4ke_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
F d1i4kf_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
G d1i4kg_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
H d1i4kh_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
I d1i4ki_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
J d1i4kj_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
K d1i4kk_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
L d1i4kl_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
M d1i4km_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
N d1i4kn_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
O d1i4ko_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
P d1i4kp_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
Q d1i4kq_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
R d1i4kr_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
S d1i4ks_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
T d1i4kt_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
U d1i4ku_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
V d1i4kv_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
W d1i4kw_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
X d1i4kx_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
Y d1i4ky_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
Z d1i4kz_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
1 PF01423 LSM LSM domain Domain The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings. PFAM PF01423

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
1,2,A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z PUTATIVE SNRNP SM-LIKE PROTEIN (1I4K:1,2,A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z)
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description