Macromolecule Annotations for the Entities in PDB 1HYS

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A430-553 d1hysa1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like Ribonuclease H HIV RNase H (Domain of reverse transcriptase) Human immunodeficiency virus type 1 [TaxId: 11676]
A1-429 d1hysa2 Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase HIV-1 reverse transcriptase Human immunodeficiency virus type 1 [TaxId: 11676]
B d1hysb_ Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase HIV-1 reverse transcriptase Human immunodeficiency virus type 1 [TaxId: 11676]
C1-107 d1hysc1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Mouse (Mus musculus), cluster 4 [TaxId: 10090]
C108-214 d1hysc2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Mouse (Mus musculus) [TaxId: 10090]
D1-123 d1hysd1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Mouse (Mus musculus), cluster 6 [TaxId: 10090]
D124-220 d1hysd2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Mouse (Mus musculus) [TaxId: 10090]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) Family
A PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) Family
C PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
A PF00075 RNase_H RNase H Domain RNase H digests the RNA strand of an RNA/DNA hybrid. Important enzyme in retroviral replication cycle, and often found as a domain associated with reverse transcriptases. Structure is a mixed alpha+beta fold with three a/b/a layers. PFAM PF00075
B PF06815 RVT_connect Reverse transcriptase connection domain Domain This domain is known as the connection domain. This domain lies between the thumb and palm domains [1]. PFAM PF06815
A PF06817 RVT_thumb Reverse transcriptase thumb domain Domain This domain is known as the thumb domain. It is composed of a four helix bundle [1]. PFAM PF06817
D PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
C PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
A PF06815 RVT_connect Reverse transcriptase connection domain Domain This domain is known as the connection domain. This domain lies between the thumb and palm domains [1]. PFAM PF06815
B PF06817 RVT_thumb Reverse transcriptase thumb domain Domain This domain is known as the thumb domain. It is composed of a four helix bundle [1]. PFAM PF06817
D PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
E 5'-R(*UP*CP*AP*GP*CP*CP*AP*CP*UP*UP*UP*UP*UP*AP*AP*AP*AP*GP*AP*AP*AP*AP*G)- 3' (1HYS:E)
  • none
  • none
  • none
F 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*AP*AP*AP*AP*AP*GP*TP*GP*GP*CP*TP*G)- 3' (1HYS:F)
  • none
  • none
  • none
A HIV-1 REVERSE TRANSCRIPTASE (1HYS:A)
  • none
  • none
B HIV-1 REVERSE TRANSCRIPTASE (1HYS:B)
  • none
  • none
  • none
C FAB-28 MONOCLONAL ANTIBODY FRAGMENT LIGHT CHAIN (1HYS:C)
  • none
  • none
  • none
D FAB-28 MONOCLONAL ANTIBODY FRAGMENT HEAVY CHAIN (1HYS:D)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description