Macromolecule Annotations for the Entities in PDB 1HYS

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A430-553 d1hysa1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like Ribonuclease H HIV RNase H (Domain of reverse transcriptase) Human immunodeficiency virus type 1 [TaxId: 11676]
A1-429 d1hysa2 Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase HIV-1 reverse transcriptase Human immunodeficiency virus type 1 [TaxId: 11676]
B d1hysb_ Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase HIV-1 reverse transcriptase Human immunodeficiency virus type 1 [TaxId: 11676]
C1-107 d1hysc1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Mouse (Mus musculus), cluster 4 [TaxId: 10090]
C108-214 d1hysc2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Mouse (Mus musculus) [TaxId: 10090]
D1-123 d1hysd1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Mouse (Mus musculus), cluster 6 [TaxId: 10090]
D124-220 d1hysd2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Mouse (Mus musculus) [TaxId: 10090]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF06817 RVT_thumb Reverse transcriptase thumb domain Domain This domain is known as the thumb domain. It is composed of a four helix bundle [1]. PFAM PF06817
D PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
C PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
A PF00075 RNase_H RNase H Domain RNase H digests the RNA strand of an RNA/DNA hybrid. Important enzyme in retroviral replication cycle, and often found as a domain associated with reverse transcriptases. Structure is a mixed alpha+beta fold with three a/b/a layers. PFAM PF00075
A PF06815 RVT_connect Reverse transcriptase connection domain Domain This domain is known as the connection domain. This domain lies between the thumb and palm domains [1]. PFAM PF06815
A PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) Family
B PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) Family
B PF06815 RVT_connect Reverse transcriptase connection domain Domain This domain is known as the connection domain. This domain lies between the thumb and palm domains [1]. PFAM PF06815
A PF06817 RVT_thumb Reverse transcriptase thumb domain Domain This domain is known as the thumb domain. It is composed of a four helix bundle [1]. PFAM PF06817
D PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
C PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
E 5'-R(*UP*CP*AP*GP*CP*CP*AP*CP*UP*UP*UP*UP*UP*AP*AP*AP*AP*GP*AP*AP*AP*AP*G)- 3' (1HYS:E)
  • none
  • none
  • none
F 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*AP*AP*AP*AP*AP*GP*TP*GP*GP*CP*TP*G)- 3' (1HYS:F)
  • none
  • none
  • none
A HIV-1 REVERSE TRANSCRIPTASE (1HYS:A)
  • none
  • none
B HIV-1 REVERSE TRANSCRIPTASE (1HYS:B)
  • none
  • none
  • none
C FAB-28 MONOCLONAL ANTIBODY FRAGMENT LIGHT CHAIN (1HYS:C)
  • none
  • none
  • none
D FAB-28 MONOCLONAL ANTIBODY FRAGMENT HEAVY CHAIN (1HYS:D)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description