Macromolecule Annotations for the Entities in PDB 1HMV

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A430-554 d1hmva1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like Ribonuclease H HIV RNase H (Domain of reverse transcriptase) Human immunodeficiency virus type 1 [TaxId: 11676]
A1-429 d1hmva2 Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase HIV-1 reverse transcriptase Human immunodeficiency virus type 1 [TaxId: 11676]
B d1hmvb_ Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase HIV-1 reverse transcriptase Human immunodeficiency virus type 1 [TaxId: 11676]
C430-554 d1hmvc1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like Ribonuclease H HIV RNase H (Domain of reverse transcriptase) Human immunodeficiency virus type 1 [TaxId: 11676]
C1-429 d1hmvc2 Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase HIV-1 reverse transcriptase Human immunodeficiency virus type 1 [TaxId: 11676]
D d1hmvd_ Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase HIV-1 reverse transcriptase Human immunodeficiency virus type 1 [TaxId: 11676]
E430-554 d1hmve1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like Ribonuclease H HIV RNase H (Domain of reverse transcriptase) Human immunodeficiency virus type 1 [TaxId: 11676]
E1-429 d1hmve2 Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase HIV-1 reverse transcriptase Human immunodeficiency virus type 1 [TaxId: 11676]
F d1hmvf_ Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase HIV-1 reverse transcriptase Human immunodeficiency virus type 1 [TaxId: 11676]
G430-554 d1hmvg1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like Ribonuclease H HIV RNase H (Domain of reverse transcriptase) Human immunodeficiency virus type 1 [TaxId: 11676]
G1-429 d1hmvg2 Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase HIV-1 reverse transcriptase Human immunodeficiency virus type 1 [TaxId: 11676]
H d1hmvh_ Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase HIV-1 reverse transcriptase Human immunodeficiency virus type 1 [TaxId: 11676]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 1hmvA01 Alpha Beta Roll HIV Type 1 Reverse Transcriptase; Chain A, domain 1 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
A2 1hmvA02 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
A3 1hmvA03 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
A4 1hmvA04 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
A5 1hmvA05 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
B1 1hmvB01 Alpha Beta Roll HIV Type 1 Reverse Transcriptase; Chain A, domain 1 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
B2 1hmvB02 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
B3 1hmvB03 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
B4 1hmvB04 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
C1 1hmvC01 Alpha Beta Roll HIV Type 1 Reverse Transcriptase; Chain A, domain 1 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
C2 1hmvC02 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
C3 1hmvC03 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
C4 1hmvC04 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
C5 1hmvC05 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
D1 1hmvD01 Alpha Beta Roll HIV Type 1 Reverse Transcriptase; Chain A, domain 1 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
D2 1hmvD02 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
D3 1hmvD03 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
D4 1hmvD04 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
E1 1hmvE01 Alpha Beta Roll HIV Type 1 Reverse Transcriptase; Chain A, domain 1 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
E2 1hmvE02 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
E3 1hmvE03 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
E4 1hmvE04 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
E5 1hmvE05 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
F1 1hmvF01 Alpha Beta Roll HIV Type 1 Reverse Transcriptase; Chain A, domain 1 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
F2 1hmvF02 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
F3 1hmvF03 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
F4 1hmvF04 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
G1 1hmvG01 Alpha Beta Roll HIV Type 1 Reverse Transcriptase; Chain A, domain 1 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
G2 1hmvG02 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
G3 1hmvG03 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
G4 1hmvG04 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
G5 1hmvG05 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
H1 1hmvH01 Alpha Beta Roll HIV Type 1 Reverse Transcriptase; Chain A, domain 1 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
H2 1hmvH02 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
H3 1hmvH03 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
H4 1hmvH04 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF06817 RVT_thumb Reverse transcriptase thumb domain Domain This domain is known as the thumb domain. It is composed of a four helix bundle [1]. PFAM PF06817
B PF06817 RVT_thumb Reverse transcriptase thumb domain Domain This domain is known as the thumb domain. It is composed of a four helix bundle [1]. PFAM PF06817
A PF06815 RVT_connect Reverse transcriptase connection domain Domain This domain is known as the connection domain. This domain lies between the thumb and palm domains [1]. PFAM PF06815
B PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) Family
A PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) Family
A PF00075 RNase_H RNase H Domain RNase H digests the RNA strand of an RNA/DNA hybrid. Important enzyme in retroviral replication cycle, and often found as a domain associated with reverse transcriptases. Structure is a mixed alpha+beta fold with three a/b/a layers. PFAM PF00075
B PF06815 RVT_connect Reverse transcriptase connection domain Domain This domain is known as the connection domain. This domain lies between the thumb and palm domains [1]. PFAM PF06815

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,C,E,G HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) (1HMV:A,C,E,G)
  • none
B,D,F,H HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) (1HMV:B,D,F,H)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description